Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C0J56_RS25500 Genome accession   NZ_CP025542
Coordinates   5654659..5656248 (+) Length   529 a.a.
NCBI ID   WP_134925871.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5649659..5661248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS25480 (C0J56_25465) pgeF 5651459..5652183 (-) 725 Protein_4872 peptidoglycan editing factor PgeF -
  C0J56_RS25485 (C0J56_25470) rluD 5652180..5653142 (-) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C0J56_RS25490 (C0J56_25475) - 5653294..5654310 (+) 1017 WP_134925869.1 outer membrane protein assembly factor BamD -
  C0J56_RS25495 (C0J56_25480) - 5654436..5654669 (+) 234 WP_134925870.1 PP0621 family protein -
  C0J56_RS25500 (C0J56_25485) pilS 5654659..5656248 (+) 1590 WP_134925871.1 ATP-binding protein Regulator
  C0J56_RS25505 (C0J56_25490) pilR 5656245..5657591 (+) 1347 WP_134925872.1 sigma-54 dependent transcriptional regulator Regulator
  C0J56_RS25510 (C0J56_25495) - 5657766..5658131 (-) 366 WP_134925873.1 DUF6124 family protein -
  C0J56_RS25515 (C0J56_25500) - 5658952..5659914 (+) 963 WP_134922977.1 IS110 family transposase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58943.69 Da        Isoelectric Point: 7.3787

>NTDB_id=262465 C0J56_RS25500 WP_134925871.1 5654659..5656248(+) (pilS) [Pseudomonas fluorescens strain 2P24]
MSAEASSPREKQTQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYSVALVERLQLWRNNPSLRAQSLTISGTGLTLQPSFIALGHNEQHQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLEQFVRQARESMAEH
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=262465 C0J56_RS25500 WP_134925871.1 5654659..5656248(+) (pilS) [Pseudomonas fluorescens strain 2P24]
GTGAGCGCTGAGGCCTCCAGCCCGCGCGAAAAACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTACTGCTGATTTCCAGCAAACTGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTTCTCGAAAACACCCGCCGCCCTGCCCGACTGTTC
GGCCTCGCCCTCACCGACGTGCTGTTGCTCTCGTGGCTGTTCTTCGCCGCAGGCGGTGTGCCCAGCGCCATCGGTAACCT
GCTCATCGTCTCGGTAGCCATCGGCAATACGCTATTGCGAGGCCGGGTCGGCCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGCTCGACTTTCTTCCTCGGCCTGAGCGACTCGAACCGCCCCAGCAGCTACCTGCAAGCCGGTACCCTGGGG
GCACTGTGCTTCGCCGCCGCCCTGCTGGTACAAGGCCTGACTCGACGGCTGGAAGCCAGCGAAACCCTGGCTGAGCAACG
GGCCAGCGAAGTGATCGGCCTTGAAGCACTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTGGACC
GCGAACGTCGGGTACAACTGGCCAACGAAAGCGCCTTGAATCTGCTGGGCATGCACGACCTGGTCGGCCAGCGGATCGAT
GACTACTCCGTCGCCCTGGTCGAGCGCCTGCAACTGTGGCGGAACAACCCTAGCCTGCGCGCACAAAGCCTGACCATCAG
CGGCACGGGCCTGACACTGCAACCGAGCTTCATCGCCCTGGGCCACAACGAGCAGCATCAGATCCTGGTCTTTCTCGAAG
ACCTGGCCCAGGTTGCCCAGCAGGCCCAGCAACTGAAACTCGCTTCCCTCGGGCGCCTCACCGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGACG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACACCCCAACGCCTCGATCTGCGGACCTGGCTCGAGCAGTTCGTCCGACAGGCGCGCGAAAGCATGGCCGAGCAC
CAGCAATTGCACCTGAGCATCGATCCGGGCGACTACACCACGCTGATGGACCCCGACCAGCTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGTGCAATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAGCTATCCACACTGGACATCATCGACAACGGCCCCGGCGTGACTCCAGAGCAGCAGGCGCACTTGTTCGAGCCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.848

99.811

0.597

Multiple sequence alignment