Detailed information NTG0262460

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C0J56_RS21055
• Genome accession: NZ_CP025542
• Coordinates: 4697048..4699294 (-)
• Length: 748 a.a.
• NCBI ID: WP_134925266.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain 2P24
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4692048..4704294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0J56_RS21020 (C0J56_21010)	murB	4692433..4693452 (-)	1020	WP_134925261.1	UDP-N-acetylmuramate dehydrogenase	-
C0J56_RS21025 (C0J56_21015)	-	4693449..4693913 (-)	465	WP_134925262.1	low molecular weight protein-tyrosine-phosphatase	-
C0J56_RS21030 (C0J56_21020)	kdsB	4693913..4694677 (-)	765	WP_134925263.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C0J56_RS21035 (C0J56_21025)	-	4694674..4694859 (-)	186	WP_003179363.1	Trm112 family protein	-
C0J56_RS21040 (C0J56_21030)	lpxK	4694882..4695892 (-)	1011	WP_134925264.1	tetraacyldisaccharide 4'-kinase	-
C0J56_RS21045 (C0J56_21035)	-	4695892..4696320 (-)	429	WP_134925265.1	biopolymer transporter ExbD	-
C0J56_RS21050 (C0J56_21040)	exbB	4696317..4696952 (-)	636	WP_024616893.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C0J56_RS21055 (C0J56_21045)	comA	4697048..4699294 (-)	2247	WP_134925266.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C0J56_RS21060 (C0J56_21050)	-	4699438..4699953 (+)	516	WP_046063671.1	DUF2062 domain-containing protein	-
C0J56_RS21065 (C0J56_21055)	-	4700122..4700901 (-)	780	WP_072347169.1	ABC transporter permease	-
C0J56_RS21070 (C0J56_21060)	-	4700904..4701836 (-)	933	WP_109754403.1	ABC transporter ATP-binding protein	-
C0J56_RS21075 (C0J56_21065)	-	4701973..4702596 (-)	624	WP_134925267.1	glutathione S-transferase	-
C0J56_RS21080 (C0J56_21070)	-	4702641..4703300 (-)	660	WP_134925268.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81001.18 Da
• Isoelectric Point: 10.1285

>NTDB_id=262460 C0J56_RS21055 WP_134925266.1 4697048..4699294(-) (comA) [Pseudomonas fluorescens strain 2P24]
MRTGLIALALGLSTPIFLPALPPLWLIAAMPVLALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLPVALDGETRWVEG
RVVGLPQRGDGVVRFELADAHSRRTRLPTTLRLAWFGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYSAWLLSRGIGATG
TVKDGRLLQAARGAWRDEVRQALAQVDANGRSGALAALVLGDGGGLSREDWQVLQNTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFAGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLVGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPTWALGIAVLGAFLLLLPKGVPLRVLGWPMVLLMV
FPPREHLPPGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
PAVRNGLPTKEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDIHAE
RALLDEPLALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDRPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=262460 C0J56_RS21055 WP_134925266.1 4697048..4699294(-) (comA) [Pseudomonas fluorescens strain 2P24]
ATGCGCACAGGGTTAATCGCGCTTGCACTGGGGCTGTCGACCCCGATTTTTTTACCGGCACTGCCACCGTTGTGGCTGAT
TGCAGCCATGCCGGTGCTGGCGCTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGTCTGTCGGCGCAGTTTGCGCTGGACGACCGGTTACCCGTCGCGCTCGATGGAGAAACCCGTTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACGGGGCGATGGCGTGGTGCGTTTCGAACTGGCTGATGCCCATTCACGTCGTACCCGGCT
ACCGACGACACTGCGCCTCGCCTGGTTCGGTGGCCCGCCGGTCAACAGCGGCGAGCGCTGGCGATTGGCGGTGAAACTCA
AGCGACCCGCCGGGTTGCTGAACCCACACGGCTTCGATTATTCAGCCTGGTTGTTGAGTCGCGGTATCGGCGCGACCGGT
ACGGTCAAGGACGGCCGTCTTTTGCAGGCGGCCCGGGGCGCCTGGCGGGATGAGGTGCGCCAGGCACTGGCACAGGTCGA
CGCCAACGGCCGCTCCGGTGCGCTGGCGGCGCTGGTGCTGGGCGACGGTGGGGGGCTGAGTCGCGAAGATTGGCAGGTGC
TGCAAAACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCTGGCGCGGCGCGCTATGGCCTGTGGCCGGCAGGCCTGGCATGGTTGCCTTGGGCCTGCGCGCTGGCTTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGGTTCGAAGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGTTTCAAGCAGCCGGACCCGTGGTGGGCATGGCTGCTGGCCTTCGCCGGGGTGCTGGTATTCGATCCGCTT
GCCAGCCTGCGGCCAGGGTTCTGGTTATCGTTCGCGGCCGTCGCCATATTGATGTTCACCTTTGGCGGTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGGTCGGCCTGTGTCCATTGTTGTTGATCGTGGGGT
TGCCGGTCAGTCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTCTTGCCGCCGGCGCTG
CTCGGCACGGCGTTGTTGCCGGTGCCGCTCGTTGGCGAAGGCCTGCTGTGGATCGCCGGCGGACTGCTCGATCTGTTGTT
CAAGGGGCTGACGCTGGTCGCCGGACGAATGCCGGCCTGGGTCCCGGCCGCAGTCCCGACCTGGGCCCTGGGTATCGCCG
TCCTCGGCGCTTTTCTGCTGCTGTTGCCCAAAGGTGTGCCTCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCTCCGCGAGAACACCTGCCGCCAGGGCAAGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGCCGGCACACCCTGCTATACGACGCCGGGCCGCGTTTTGGCGAGGCTGATGTGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAATTGGGGGTTCGAGGCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCT
CCGGCCGTACGCAACGGGCTGCCGACGAAGGAAGTGATCAGCGGCGATCCCGATGCGCTGCCCGCCGAGTTGCTGGCCGG
GCCTTGTGACAGTGGCCGGCGCTGGGAGTGGGACGGGGTAGGGTTCGAGCTATGGCGATGGGCCTCTGCTGTCGAAAGCA
ACCAGAAATCCTGCGTCTTGCTGGTGGAGGCAGGCGGTGAGCGCCTGCTTTTGACCGGCGATATCGACATCCATGCCGAA
CGCGCTTTGCTCGACGAGCCCCTGGCGCTACCGATCCAGTGGCTGGCCGCGCCTCACCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCACGTCTCAAGCCGCATTCGGTGTTGATTTCCCGAGGGCAGGGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCCCGCTATCGCCGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGTTGCCGCGCACCGAGGCCGGGCACCGACGTTACTGGCGCGATCGGCCAGCAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.809	95.856	0.583