Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C0J56_RS21050 Genome accession   NZ_CP025542
Coordinates   4696317..4696952 (-) Length   211 a.a.
NCBI ID   WP_024616893.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4691317..4701952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS21015 (C0J56_21005) - 4691696..4692166 (-) 471 WP_109754395.1 (2Fe-2S)-binding protein -
  C0J56_RS21020 (C0J56_21010) murB 4692433..4693452 (-) 1020 WP_134925261.1 UDP-N-acetylmuramate dehydrogenase -
  C0J56_RS21025 (C0J56_21015) - 4693449..4693913 (-) 465 WP_134925262.1 low molecular weight protein-tyrosine-phosphatase -
  C0J56_RS21030 (C0J56_21020) kdsB 4693913..4694677 (-) 765 WP_134925263.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C0J56_RS21035 (C0J56_21025) - 4694674..4694859 (-) 186 WP_003179363.1 Trm112 family protein -
  C0J56_RS21040 (C0J56_21030) lpxK 4694882..4695892 (-) 1011 WP_134925264.1 tetraacyldisaccharide 4'-kinase -
  C0J56_RS21045 (C0J56_21035) - 4695892..4696320 (-) 429 WP_134925265.1 biopolymer transporter ExbD -
  C0J56_RS21050 (C0J56_21040) exbB 4696317..4696952 (-) 636 WP_024616893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C0J56_RS21055 (C0J56_21045) comA 4697048..4699294 (-) 2247 WP_134925266.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C0J56_RS21060 (C0J56_21050) - 4699438..4699953 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  C0J56_RS21065 (C0J56_21055) - 4700122..4700901 (-) 780 WP_072347169.1 ABC transporter permease -
  C0J56_RS21070 (C0J56_21060) - 4700904..4701836 (-) 933 WP_109754403.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.95 Da        Isoelectric Point: 8.0840

>NTDB_id=262459 C0J56_RS21050 WP_024616893.1 4696317..4696952(-) (exbB) [Pseudomonas fluorescens strain 2P24]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=262459 C0J56_RS21050 WP_024616893.1 4696317..4696952(-) (exbB) [Pseudomonas fluorescens strain 2P24]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGTTGGGCGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAATACCCTGGGAACCATCGCCGCCATGTCCCCGCTGCTCGGCCTGCTGGGTACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACCAACGCCGCGGTACTGGCAGGGGGGATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCGGCCGTATTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGATGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.526

0.848

Multiple sequence alignment