Detailed information NTG0262407

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CU052_RS08820
• Genome accession: NZ_CP025537
• Coordinates: 1814354..1815223 (-)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain 345
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1809354..1820223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CU052_RS08785 (CU052_09185)	rpsP	1810356..1810604 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
CU052_RS08790 (CU052_09190)	rimM	1810633..1811181 (+)	549	WP_101904487.1	ribosome maturation factor RimM	-
CU052_RS08795 (CU052_09195)	trmD	1811209..1811952 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CU052_RS08800 (CU052_09200)	rplS	1811994..1812347 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
CU052_RS08805 (CU052_09205)	yacG	1812714..1812908 (-)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
CU052_RS08810 (CU052_09210)	zapD	1812971..1813711 (-)	741	WP_038897986.1	cell division protein ZapD	-
CU052_RS08815 (CU052_09215)	coaE	1813739..1814353 (-)	615	WP_101904488.1	dephospho-CoA kinase	-
CU052_RS08820 (CU052_09220)	pilD	1814354..1815223 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
CU052_RS08825 (CU052_09225)	pilC	1815296..1816519 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
CU052_RS08830 (CU052_09230)	pilB	1816553..1818238 (-)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CU052_RS08835 (CU052_09235)	pilA	1818242..1818706 (-)	465	WP_101904489.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
CU052_RS08845 (CU052_09245)	nadC	1818971..1819858 (-)	888	WP_009700089.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=262407 CU052_RS08820 WP_045488712.1 1814354..1815223(-) (pilD) [Vibrio harveyi strain 345]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=262407 CU052_RS08820 WP_045488712.1 1814354..1815223(-) (pilD) [Vibrio harveyi strain 345]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436