Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   C0J00_RS01490 Genome accession   NZ_CP025536
Coordinates   289234..290280 (+) Length   348 a.a.
NCBI ID   WP_104967236.1    Uniprot ID   A0A2L0D246
Organism   Streptococcus pluranimalium strain TH11417     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 284234..295280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS01470 (C0J00_01470) amiF 284256..285185 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  C0J00_RS01475 (C0J00_01475) - 285487..287148 (+) 1662 WP_104967233.1 peptide ABC transporter substrate-binding protein -
  C0J00_RS01480 (C0J00_01480) - 287263..288177 (+) 915 WP_104967234.1 ABC transporter permease -
  C0J00_RS01485 (C0J00_01485) - 288188..289219 (+) 1032 WP_104967235.1 ABC transporter permease -
  C0J00_RS01490 (C0J00_01490) oppD 289234..290280 (+) 1047 WP_104967236.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01495 (C0J00_01495) amiF 290280..291215 (+) 936 WP_104967237.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01505 (C0J00_01505) - 291503..292423 (-) 921 Protein_256 IS30 family transposase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38532.08 Da        Isoelectric Point: 4.8515

>NTDB_id=262339 C0J00_RS01490 WP_104967236.1 289234..290280(+) (oppD) [Streptococcus pluranimalium strain TH11417]
MAQENILEVKNLHVDFQTYAGEVQAIREVNFELKKGETLAIVGESGSGKSVTTKTLMGLSAKNANISGEILFKNRNLNDL
KEEEWVKIRGNEIAMIFQDPMTSLDPTMKIGMQIAEPIMLHEKISKKEALDRALELMKSVGIPNAEEHINDYPHQWSGGM
RQRAVIAVALAGNPEILIADEPTTALDVTIQAQILNLMKDIQQKTSSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTAAGALQSIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPMFKVSDSHYAATWLL
DKRAPEVTPPPQILKRWAKWQEKYGGIN

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=262339 C0J00_RS01490 WP_104967236.1 289234..290280(+) (oppD) [Streptococcus pluranimalium strain TH11417]
ATGGCACAAGAAAATATCTTAGAAGTTAAAAATCTTCATGTTGATTTCCAAACTTATGCTGGTGAAGTCCAAGCCATTCG
TGAAGTTAATTTTGAACTGAAAAAAGGCGAAACTCTCGCGATTGTTGGTGAGTCTGGTTCAGGTAAATCAGTAACAACCA
AGACACTTATGGGCTTGTCTGCAAAGAATGCTAATATTTCAGGTGAGATTCTTTTTAAAAATCGTAATCTCAATGATTTA
AAAGAAGAAGAATGGGTTAAAATCCGTGGAAATGAAATTGCGATGATTTTCCAAGATCCGATGACTAGTCTTGATCCAAC
CATGAAGATTGGTATGCAAATCGCAGAACCGATTATGCTACATGAAAAGATTTCGAAAAAAGAAGCTCTTGATCGTGCAC
TTGAGCTTATGAAGAGTGTCGGTATTCCGAATGCTGAGGAACATATCAACGATTACCCTCACCAGTGGTCAGGTGGAATG
CGCCAACGTGCCGTCATCGCTGTTGCGCTAGCTGGAAATCCTGAAATATTAATTGCTGATGAACCAACGACTGCTCTTGA
TGTAACGATTCAAGCTCAGATTTTAAATTTAATGAAAGATATTCAGCAGAAAACATCAAGCTCGATTATCTTTATCACTC
ACGACTTGGGTGTTGTTGCTGGTATGGCGGATCGTGTTGCTGTTATGTATGCTGGTAAAATCGTTGAATATGGGACTGTT
GATGAAGTTTTCTACAACCCGCAACATCCTTACACTTGGGGACTTTTAAATTCAATGCCTACAACGGATACAGCAGCTGG
AGCCCTCCAGTCTATTCCTGGAACACCACCGGATTTGTTGAATCCTCCAAAAGGAGATGCCTTTGCAGCTCGTAATGAAT
TTGCATTGGACATTGATCACGAAGAAGAACCACCGATGTTTAAAGTATCAGATAGTCATTACGCCGCAACATGGCTCTTA
GATAAAAGAGCACCAGAGGTGACCCCTCCACCACAAATCCTAAAACGATGGGCTAAATGGCAAGAAAAATATGGAGGGAT
TAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D246

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

81.449

99.138

0.807
  amiE Streptococcus salivarius strain HSISS4

55.758

94.828

0.529
  amiE Streptococcus thermophilus LMG 18311

55.152

94.828

0.523
  amiE Streptococcus thermophilus LMD-9

55.152

94.828

0.523

Multiple sequence alignment