Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   C0J00_RS01495 Genome accession   NZ_CP025536
Coordinates   290280..291215 (+) Length   311 a.a.
NCBI ID   WP_104967237.1    Uniprot ID   A0A2L0D270
Organism   Streptococcus pluranimalium strain TH11417     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 285280..296215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS01475 (C0J00_01475) - 285487..287148 (+) 1662 WP_104967233.1 peptide ABC transporter substrate-binding protein -
  C0J00_RS01480 (C0J00_01480) - 287263..288177 (+) 915 WP_104967234.1 ABC transporter permease -
  C0J00_RS01485 (C0J00_01485) - 288188..289219 (+) 1032 WP_104967235.1 ABC transporter permease -
  C0J00_RS01490 (C0J00_01490) oppD 289234..290280 (+) 1047 WP_104967236.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01495 (C0J00_01495) amiF 290280..291215 (+) 936 WP_104967237.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01505 (C0J00_01505) - 291503..292423 (-) 921 Protein_256 IS30 family transposase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35190.10 Da        Isoelectric Point: 6.5701

>NTDB_id=262340 C0J00_RS01495 WP_104967237.1 290280..291215(+) (amiF) [Streptococcus pluranimalium strain TH11417]
MENNKKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGEKVSHL
KGKAQHNFRKQAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSSKEERDEKVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPEKERARVHQVYDPTAELDGQERTMHEITPGHFVLATEEEAQLYKEQLQK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=262340 C0J00_RS01495 WP_104967237.1 290280..291215(+) (amiF) [Streptococcus pluranimalium strain TH11417]
ATGGAAAATAACAAAAAAAAATTAGTTGAGCTAAAAAATGTTTCTCTTACGTTTAACAAAGGGAAATCTAATGAAGTTAA
AGCCATTAATAATGTTAGCTTTGACATCTATGAAGGTGAAGTTTTTGGTTTAGTTGGTGAGTCTGGTTCAGGTAAAACAA
CCGTTGGTCGTGCTATTTTGAAACTGTATGATATTAACGAAGGAGAAATTATCTTTAATGGTGAAAAAGTCTCACATTTA
AAAGGTAAAGCTCAACATAATTTCCGTAAGCAAGCTCAAATGATTTTTCAAGATCCACAAGCAAGTCTTAACGGGCGAAT
GAAAATCCGTGATATTGTTGCTGAAGGATTGGATATCCATAAGTTGGTTTCATCTAAGGAAGAACGTGATGAAAAAGTTC
AGCACCTTCTTGATTTAGTTGGTTTAAATAAAGATCACTTAACACGTTATCCTCATGAGTTTTCTGGTGGACAACGTCAG
CGTATCGGTATTGCCCGTGCTCTTGCTGTCGAACCGAAATTTATCATTGCCGATGAACCAATTTCAGCGTTGGATGTTTC
TATTCAAGCCCAAGTTGTTAATTTAATGCAAAAATTACAACATGAGCAAGGCTTGACATATCTCTTTGTTGCTCACGATT
TATCAATGGTTAAATATATCTCAGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGAACATCTGAAGAT
GTTTATAATAATCCGATTCATCCTTATACAAAGAGTTTGTTGTCAGCTATTCCAGAACCGGATCCTGAAAAAGAACGTGC
CCGTGTTCATCAAGTCTATGATCCAACAGCAGAATTGGATGGACAAGAACGCACTATGCATGAAATCACACCAGGTCATT
TTGTTCTTGCTACAGAAGAAGAAGCACAGCTCTATAAAGAACAATTGCAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D270

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.896

99.035

0.534
  amiF Streptococcus thermophilus LMG 18311

53.571

99.035

0.531
  amiF Streptococcus salivarius strain HSISS4

53.571

99.035

0.531

Multiple sequence alignment