Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C0J07_RS17315 Genome accession   NZ_CP025522
Coordinates   3740793..3742214 (-) Length   473 a.a.
NCBI ID   WP_127815314.1    Uniprot ID   -
Organism   Bordetella avium strain JBBA     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3735793..3747214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J07_RS17290 (C0J07_17345) - 3736415..3737044 (+) 630 WP_012418981.1 LysE family transporter -
  C0J07_RS17295 (C0J07_17350) - 3737070..3738677 (+) 1608 WP_012418982.1 peptide chain release factor 3 -
  C0J07_RS17300 (C0J07_17355) - 3738714..3739379 (+) 666 WP_012418983.1 hypothetical protein -
  C0J07_RS17305 (C0J07_17360) bfr 3739452..3739928 (-) 477 WP_012418984.1 bacterioferritin -
  C0J07_RS17310 (C0J07_17365) - 3740454..3740732 (+) 279 WP_039051339.1 (2Fe-2S)-binding protein -
  C0J07_RS17315 (C0J07_17370) rpoN/rpoN1 3740793..3742214 (-) 1422 WP_127815314.1 RNA polymerase factor sigma-54 Machinery gene
  C0J07_RS17320 (C0J07_17375) - 3742213..3742848 (+) 636 WP_012418987.1 hypothetical protein -
  C0J07_RS17325 (C0J07_17380) leuA 3743205..3744914 (+) 1710 WP_012418988.1 2-isopropylmalate synthase -
  C0J07_RS17330 (C0J07_17385) - 3744994..3746283 (-) 1290 WP_114852118.1 amidase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52162.58 Da        Isoelectric Point: 4.8038

>NTDB_id=262204 C0J07_RS17315 WP_127815314.1 3740793..3742214(-) (rpoN/rpoN1) [Bordetella avium strain JBBA]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISLALADNPLLERDENPAEQVDSQREASIESDDSSPE
IETRLEEMPGSGGVYPDEDEPQQARADTLREHLLGQLALTRAGPRDAALVEVLIEELDDNGYLGSPLVEILQWLPPELEI
DEDELRVALSLLQSFDPPGIGAHDMADCLLLQLRQPDLTRLPEAANPVILRCAREICVQHLSLLASGNLARLRDVLGVDE
PTLRTAHSLIVRLEPRPGRAWTVPAAEYALPDVLVSKTRQGWQAVLNSAAMPRLQINGLYAQMLANQRETAYAGLSAQLQ
QARWMIRNIEQRFDTILRVSQAIVVHQAAFFSEGPAAMRPLILKDIAAELGLHESTISRATTQKYMLTPFGTLELKYFFG
TGLATDSGNAASATAVQAHIRKMVSEENRAKPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=262204 C0J07_RS17315 WP_127815314.1 3740793..3742214(-) (rpoN/rpoN1) [Bordetella avium strain JBBA]
ATGCAAAATATTGTACCTATGACTCGTCCTGCTCTAGAACTTCGGCCTGGTCAGCATTTAACTTTGACCCCGCAACTGCA
ACAGTCGATCCGGCTCTTGCAGCTATCCTCATTGGAGCTGGAGGCGGAAATCTCCCTGGCCTTGGCCGACAATCCGTTGC
TGGAGCGCGACGAAAATCCGGCCGAACAGGTGGACTCGCAGCGCGAGGCAAGCATCGAAAGTGATGATTCCTCACCTGAA
ATCGAGACGCGTCTGGAAGAAATGCCGGGTTCGGGCGGCGTCTATCCAGACGAAGATGAGCCGCAACAGGCCCGCGCCGA
CACGCTGCGTGAGCATTTGCTGGGCCAACTGGCGCTGACCCGCGCCGGGCCGCGCGACGCGGCATTGGTTGAGGTGCTCA
TCGAGGAGCTGGACGACAACGGCTATCTGGGCTCGCCGCTGGTGGAAATCTTGCAGTGGCTGCCGCCGGAGCTGGAGATC
GATGAAGACGAGTTGCGTGTCGCTTTGAGCCTGTTGCAGTCTTTCGACCCGCCGGGCATCGGCGCCCACGATATGGCGGA
CTGTCTGTTGCTGCAATTGCGCCAACCCGATCTGACTCGTTTGCCCGAAGCCGCCAACCCTGTCATCTTGCGTTGTGCGC
GCGAGATCTGCGTGCAGCATCTGTCCTTGCTGGCCTCAGGCAATTTGGCGCGCCTGCGTGACGTGCTGGGGGTGGACGAA
CCGACCTTGCGCACCGCCCACAGCCTTATCGTGCGCCTAGAGCCCCGACCCGGTCGGGCCTGGACCGTCCCGGCGGCCGA
GTATGCGCTGCCTGACGTGCTGGTGAGCAAAACGCGGCAGGGCTGGCAGGCCGTGCTCAATAGCGCCGCCATGCCCCGGC
TACAGATCAATGGGTTGTATGCGCAAATGTTGGCTAACCAGCGAGAAACGGCCTATGCGGGCCTGAGCGCACAGTTGCAG
CAGGCACGCTGGATGATCCGCAATATCGAACAACGATTCGACACGATTCTGCGCGTGTCGCAGGCCATTGTGGTGCATCA
GGCGGCGTTTTTCAGTGAAGGTCCGGCTGCCATGCGTCCGCTCATTCTCAAAGACATTGCAGCTGAGTTGGGTTTGCACG
AATCCACGATTTCACGCGCCACAACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAGCTCAAATATTTCTTCGGG
ACCGGTCTTGCCACGGATAGCGGGAATGCGGCTTCTGCCACCGCTGTGCAGGCGCATATCCGCAAGATGGTGTCAGAGGA
AAACCGCGCCAAGCCGCTATCTGATAGCCAGATCATGGAGCGATTGGCCAGTCAGGGCATCGTGATTGCCCGGCGTACCG
TGGCCAAGTACCGGGAAGCCTTGCGCATTGCGCCGGCGGCGGTGCGTAAGGCGCAGGGCTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(315-470)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(101-300)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.718

100

0.522

Multiple sequence alignment