Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SPSF3K_RS01630 | Genome accession | NZ_CP025420 |
| Coordinates | 331469..331966 (+) | Length | 165 a.a. |
| NCBI ID | WP_003103409.1 | Uniprot ID | A0A0E2UEH7 |
| Organism | Streptococcus parauberis strain SPOF3K | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 326469..336966
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPSF3K_RS01610 (SPSF3K_00333) | trxA | 328237..328551 (+) | 315 | WP_003102914.1 | thioredoxin | - |
| SPSF3K_RS01615 (SPSF3K_00334) | - | 328593..328955 (-) | 363 | WP_003105722.1 | hypothetical protein | - |
| SPSF3K_RS01620 (SPSF3K_00335) | mutY | 329033..330172 (-) | 1140 | WP_037620052.1 | A/G-specific adenine glycosylase | - |
| SPSF3K_RS01625 (SPSF3K_00336) | rpsF | 331158..331448 (+) | 291 | WP_003104479.1 | 30S ribosomal protein S6 | - |
| SPSF3K_RS01630 (SPSF3K_00337) | ssb | 331469..331966 (+) | 498 | WP_003103409.1 | single-stranded DNA-binding protein | Machinery gene |
| SPSF3K_RS01635 (SPSF3K_00338) | rpsR | 332055..332294 (+) | 240 | WP_003102945.1 | 30S ribosomal protein S18 | - |
| SPSF3K_RS01640 (SPSF3K_00339) | - | 332883..333548 (-) | 666 | WP_004347363.1 | DUF1129 domain-containing protein | - |
| SPSF3K_RS01645 (SPSF3K_00340) | - | 333633..334577 (-) | 945 | WP_003105810.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18163.89 Da Isoelectric Point: 4.8894
>NTDB_id=261148 SPSF3K_RS01630 WP_003103409.1 331469..331966(+) (ssb) [Streptococcus parauberis strain SPOF3K]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF
Nucleotide
Download Length: 498 bp
>NTDB_id=261148 SPSF3K_RS01630 WP_003103409.1 331469..331966(+) (ssb) [Streptococcus parauberis strain SPOF3K]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.195 |
100 |
0.624 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.471 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
64.242 |
0.37 |