Detailed information NTG0261014

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: CR922_RS08890
• Genome accession: NZ_CP025400
• Coordinates: 1672702..1673139 (-)
• Length: 145 a.a.
• NCBI ID: WP_101361359.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain EPS
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1667702..1678139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CR922_RS08855	-	1667756..1668418 (-)	663	WP_011227583.1	CPBP family intramembrane glutamic endopeptidase	-
CR922_RS08860	-	1668521..1668969 (-)	449	Protein_1659	CAAX protease	-
CR922_RS10535	-	1669043..1669468 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
CR922_RS08870	-	1669711..1669908 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
CR922_RS08875	-	1670157..1671350 (-)	1194	WP_022096898.1	acetate kinase	-
CR922_RS08880	comYH	1671406..1672362 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
CR922_RS08885	comGG	1672407..1672724 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
CR922_RS08890	comYF	1672702..1673139 (-)	438	WP_101361359.1	competence type IV pilus minor pilin ComGF	Machinery gene
CR922_RS08895	comGE	1673123..1673416 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
CR922_RS08900	comYD	1673388..1673816 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
CR922_RS08905	comYC	1673776..1674102 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
CR922_RS08910	comYB	1674099..1675199 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
CR922_RS08915	comGA/cglA/cilD	1675081..1676022 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
CR922_RS08920	-	1676103..1676465 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16461.01 Da
• Isoelectric Point: 8.6723

>NTDB_id=261014 CR922_RS08890 WP_101361359.1 1672702..1673139(-) (comYF) [Streptococcus thermophilus strain EPS]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLCDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=261014 CR922_RS08890 WP_101361359.1 1672702..1673139(-) (comYF) [Streptococcus thermophilus strain EPS]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTGCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441