Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   CR921_RS07815 Genome accession   NZ_CP025399
Coordinates   1489589..1490623 (-) Length   344 a.a.
NCBI ID   WP_024703983.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1484589..1495623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS07790 ilvD 1484841..1486559 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  CR921_RS07795 - 1486672..1487853 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  CR921_RS07805 trmB 1488089..1488730 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CR921_RS07810 ccrZ 1488740..1489531 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  CR921_RS07815 pptB 1489589..1490623 (-) 1035 WP_024703983.1 ABC transporter permease Regulator
  CR921_RS07820 pptA 1490623..1491354 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  CR921_RS07825 - 1491419..1491838 (+) 420 WP_014621894.1 HIT family protein -
  CR921_RS07830 - 1491835..1492134 (+) 300 WP_101415677.1 hypothetical protein -
  CR921_RS07835 - 1492186..1492914 (-) 729 WP_101415678.1 hypothetical protein -
  CR921_RS07840 - 1492930..1493565 (-) 636 WP_101415679.1 DUF4230 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40019.52 Da        Isoelectric Point: 10.5812

>NTDB_id=260946 CR921_RS07815 WP_024703983.1 1489589..1490623(-) (pptB) [Streptococcus thermophilus strain GABA]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=260946 CR921_RS07815 WP_024703983.1 1489589..1490623(-) (pptB) [Streptococcus thermophilus strain GABA]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGA
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

100

100

1
  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927

Multiple sequence alignment