Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   CR921_RS07820 Genome accession   NZ_CP025399
Coordinates   1490623..1491354 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain GABA     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485623..1496354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS07795 - 1486672..1487853 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  CR921_RS07805 trmB 1488089..1488730 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CR921_RS07810 ccrZ 1488740..1489531 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  CR921_RS07815 pptB 1489589..1490623 (-) 1035 WP_024703983.1 ABC transporter permease Regulator
  CR921_RS07820 pptA 1490623..1491354 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  CR921_RS07825 - 1491419..1491838 (+) 420 WP_014621894.1 HIT family protein -
  CR921_RS07830 - 1491835..1492134 (+) 300 WP_101415677.1 hypothetical protein -
  CR921_RS07835 - 1492186..1492914 (-) 729 WP_101415678.1 hypothetical protein -
  CR921_RS07840 - 1492930..1493565 (-) 636 WP_101415679.1 DUF4230 domain-containing protein -
  CR921_RS07845 - 1494131..1496230 (-) 2100 WP_101415680.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=260947 CR921_RS07820 WP_002951673.1 1490623..1491354(-) (pptA) [Streptococcus thermophilus strain GABA]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=260947 CR921_RS07820 WP_002951673.1 1490623..1491354(-) (pptA) [Streptococcus thermophilus strain GABA]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment