Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   CR921_RS07015 Genome accession   NZ_CP025399
Coordinates   1330156..1331649 (-) Length   497 a.a.
NCBI ID   WP_101415655.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1325156..1336649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS06985 - 1325286..1325663 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  CR921_RS06990 - 1325668..1326366 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  CR921_RS06995 - 1326378..1327163 (+) 786 WP_011681414.1 hypothetical protein -
  CR921_RS07000 amiF 1327213..1328142 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  CR921_RS07005 amiE 1328135..1329220 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  CR921_RS07010 amiD 1329230..1330156 (-) 927 WP_101415654.1 oligopeptide ABC transporter permease OppC Regulator
  CR921_RS07015 amiC 1330156..1331649 (-) 1494 WP_101415655.1 ABC transporter permease Regulator
  CR921_RS07020 amiA 1331711..1333678 (-) 1968 WP_046206489.1 peptide ABC transporter substrate-binding protein Regulator
  CR921_RS07025 - 1334034..1335212 (+) 1179 WP_101415656.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55679.55 Da        Isoelectric Point: 10.0972

>NTDB_id=260942 CR921_RS07015 WP_101415655.1 1330156..1331649(-) (amiC) [Streptococcus thermophilus strain GABA]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRSWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=260942 CR921_RS07015 WP_101415655.1 1330156..1331649(-) (amiC) [Streptococcus thermophilus strain GABA]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TAGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.598

100

0.996
  amiC Streptococcus thermophilus LMG 18311

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97

Multiple sequence alignment