Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CR921_RS07010 Genome accession   NZ_CP025399
Coordinates   1329230..1330156 (-) Length   308 a.a.
NCBI ID   WP_101415654.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324230..1335156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS06980 - 1324307..1325101 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  CR921_RS06985 - 1325286..1325663 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  CR921_RS06990 - 1325668..1326366 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  CR921_RS06995 - 1326378..1327163 (+) 786 WP_011681414.1 hypothetical protein -
  CR921_RS07000 amiF 1327213..1328142 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  CR921_RS07005 amiE 1328135..1329220 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  CR921_RS07010 amiD 1329230..1330156 (-) 927 WP_101415654.1 oligopeptide ABC transporter permease OppC Regulator
  CR921_RS07015 amiC 1330156..1331649 (-) 1494 WP_101415655.1 ABC transporter permease Regulator
  CR921_RS07020 amiA 1331711..1333678 (-) 1968 WP_046206489.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34725.87 Da        Isoelectric Point: 9.7054

>NTDB_id=260941 CR921_RS07010 WP_101415654.1 1329230..1330156(-) (amiD) [Streptococcus thermophilus strain GABA]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTQTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=260941 CR921_RS07010 WP_101415654.1 1329230..1330156(-) (amiD) [Streptococcus thermophilus strain GABA]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACAAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

99.675

100

0.997
  amiD Streptococcus thermophilus LMD-9

99.675

100

0.997
  amiD Streptococcus salivarius strain HSISS4

96.104

100

0.961

Multiple sequence alignment