Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CYD28_RS12425 Genome accession   NZ_CP025396
Coordinates   2555379..2555891 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2550379..2560891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYD28_RS12395 (CYD28_12395) - 2550505..2551821 (+) 1317 WP_103416075.1 ISL3-like element ISSha1 family transposase -
  CYD28_RS12400 (CYD28_12400) - 2551950..2552198 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  CYD28_RS12405 (CYD28_12405) - 2552376..2553125 (-) 750 Protein_2409 amidohydrolase family protein -
  CYD28_RS12410 (CYD28_12410) - 2553341..2553598 (+) 258 WP_011276864.1 hypothetical protein -
  CYD28_RS12415 (CYD28_12415) - 2553801..2554871 (+) 1071 WP_011276865.1 Ltp family lipoprotein -
  CYD28_RS12420 (CYD28_12420) rpsR 2555089..2555331 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  CYD28_RS12425 (CYD28_12425) ssbA 2555379..2555891 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  CYD28_RS12430 (CYD28_12430) rpsF 2555913..2556209 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  CYD28_RS12435 (CYD28_12435) - 2556500..2557306 (+) 807 WP_033079913.1 glycoside hydrolase family 25 protein -
  CYD28_RS12440 (CYD28_12440) - 2557372..2557563 (+) 192 WP_011276869.1 hypothetical protein -
  CYD28_RS12445 (CYD28_12445) ychF 2557705..2558802 (-) 1098 WP_011276870.1 redox-regulated ATPase YchF -
  CYD28_RS12450 (CYD28_12450) - 2558814..2559017 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  CYD28_RS12455 (CYD28_12455) - 2559039..2559920 (-) 882 WP_037559655.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=260901 CYD28_RS12425 WP_011276866.1 2555379..2555891(-) (ssbA) [Staphylococcus haemolyticus strain B]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=260901 CYD28_RS12425 WP_011276866.1 2555379..2555891(-) (ssbA) [Staphylococcus haemolyticus strain B]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment