Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DRA75_RS04900 Genome accession   NZ_CP030816
Coordinates   935482..937509 (-) Length   675 a.a.
NCBI ID   WP_002226304.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 16-92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930482..942509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA75_RS04875 (DRA75_05605) uvrC 930657..932543 (+) 1887 WP_002220860.1 excinuclease ABC subunit UvrC -
  DRA75_RS04885 (DRA75_05615) - 932660..934064 (+) 1405 Protein_957 tetratricopeptide repeat protein -
  DRA75_RS04890 (DRA75_05620) trmB 934186..934902 (+) 717 WP_002220858.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DRA75_RS04895 (DRA75_05630) - 935083..935370 (-) 288 WP_002241665.1 hypothetical protein -
  DRA75_RS04900 (DRA75_05635) uvrB 935482..937509 (-) 2028 WP_002226304.1 excinuclease ABC subunit UvrB Machinery gene
  DRA75_RS04905 (DRA75_05640) - 937838..939322 (-) 1485 WP_002220855.1 S41 family peptidase -
  DRA75_RS04910 (DRA75_05645) - 939449..941254 (-) 1806 WP_002219152.1 murein hydrolase activator EnvC -
  DRA75_RS04915 (DRA75_05655) - 941582..942142 (+) 561 WP_002219151.1 CreA family protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76842.30 Da        Isoelectric Point: 4.9632

>NTDB_id=260686 DRA75_RS04900 WP_002226304.1 935482..937509(-) (uvrB) [Neisseria meningitidis strain 16-92]
MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
IQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGSE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=260686 DRA75_RS04900 WP_002226304.1 935482..937509(-) (uvrB) [Neisseria meningitidis strain 16-92]
ATGGAAGTCATCCGATACCCCGATTCCCCTTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCTACCGCTAT
TGCCGGCTTGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTAT
GCCGAAATGCGCGAGTTTTTCCCTGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGACCTGTTCATTGAAAAAGACAGCGCGATCAACGAACATATCGAGCAGATGCGCCTTTCCGCCACCA
AGAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATCTACGGTATCGGCGACCCGACCGAGTAT
CAGCAAATGGTGTTGTCCGTTAAAGAAGGCGACACCATTGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAGCGCGGCGATTTGGACTTTAAACGCGGCAGCTTCCGCGTGCGTGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGCATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTT
ATCCAGCGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCATTACGTTACCCCGCGCGATACCGTCTTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTACGTGAACGCATTGATTTCTTTACCAAAGAAAACCGTCCCGTCGAACAACAACGCATCGAAC
AGCGCACCCGCTTTGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAATTACTCCCGGCACTTCTCT
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCTGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTCACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGACTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCATGAATTTGAAAAAGTCATGCCGCAAACTGTCTTCGTTTCCGCC
ACTCCAGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTCGACGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TTCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATTGATACCGTAGAGCGCGTTGAAATCATTAGAGATTTACGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCCTCGATATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCACACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCGATTCTGTACGCCGAC
AAAATCACCGACTCTATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGTGAAAAACAAATTAAATTCAACGAAGAACA
CGGCATCGTGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATTGACGGCGTGTACCACGAAGAAGACGGTGGTAAAG
GCCGTAGACAAGGCAAAAACAAGGTTAAAGTCAGCGAAATTCACAACGAAGAAGACGCGGTTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCAGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTACTGAGGGATAGGATACGGGGGATTAA
GGAAGGGTTGTTGTTTGGGAGTGAGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(557-598)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB interaction domain (UvrB_inter)

(165-255)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

UvrB/uvrC motif (UVR)

(635-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae R6

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae D39

55.656

98.222

0.547

Multiple sequence alignment