Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DSB67_RS10610 Genome accession   NZ_CP030788
Coordinates   2199017..2201047 (-) Length   676 a.a.
NCBI ID   WP_010645717.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2194017..2206047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS10585 (DSB67_10590) moaB 2194021..2194533 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  DSB67_RS10590 (DSB67_10595) moaA 2194634..2195623 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  DSB67_RS10595 (DSB67_10600) - 2195921..2196814 (+) 894 WP_010645714.1 YvcK family protein -
  DSB67_RS10600 (DSB67_10605) luxU 2196930..2197274 (-) 345 WP_010645715.1 quorum-sensing phosphorelay protein LuxU -
  DSB67_RS10605 (DSB67_10610) luxO 2197271..2198674 (-) 1404 WP_010645716.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  DSB67_RS10610 (DSB67_10615) uvrB 2199017..2201047 (-) 2031 WP_010645717.1 excinuclease ABC subunit UvrB Machinery gene
  DSB67_RS10620 (DSB67_10625) - 2201858..2202298 (-) 441 WP_010645719.1 hypothetical protein -
  DSB67_RS10625 (DSB67_10630) - 2202318..2203649 (-) 1332 WP_010645720.1 hypothetical protein -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77059.64 Da        Isoelectric Point: 4.7490

>NTDB_id=260558 DSB67_RS10610 WP_010645717.1 2199017..2201047(-) (uvrB) [Vibrio campbellii strain DS40M4]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNF
ELEKSADEIADQVVRPTGLLDPELEVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIKGKAILYADSITK
SMRKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAQKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=260558 DSB67_RS10610 WP_010645717.1 2199017..2201047(-) (uvrB) [Vibrio campbellii strain DS40M4]
ATGAGTAAAGTTTATGAACTGGTCTCTGAATATCAACCATCCGGTGATCAGCCAACCGCCATCAAACAGTTATTAGAGGG
TTTAGACGCAGGCCTTGCCCATCAGACTCTGTTGGGTGTAACCGGCTCGGGTAAAACATTCACACTGGCAAACGTAATTG
CAGAAGCGCAGCGTCCGGCGATTCTTCTCGCGCCAAACAAAACACTTGCCGCGCAACTGTACGGTGAGATGAAAGCCTTC
TTCCCAAATAATGCCGTTGAATACTTCGTTTCTTACTACGATTACTATCAACCCGAAGCTTACGTGCCAACGACGGATAC
CTTTATTGAAAAAGACGCGTCGGTGAATGCTCACATAGAGCAGATGCGTTTATCGGCAACAAAAGCATTATTGGAACGCA
AAGATGCAATCATTGTTGCGTCGGTTTCGGCCATTTATGGCTTGGGTGACCCAGAGTCGTACCTACAAATGATGCTTCAC
TTGCGCCGCGGTGATGTGATTGATCAGCGCGACATGCTGCGTCGTCTTGCAGAACTTCAATATTCACGTAACGATGTTGC
GTTTGAGCGTGGCCAGTTCCGTGTGCGTGGTGAAGTGATTGACATCTTCCCGGCGGAATCAGACCAAGACGCCGTGCGCG
TAGAGATGTTTGACGATGAAGTCGACTGTATCAGCGTATTTGACCCATTGACTGGTGTGGTCAAACAGAGAGACCTGCCG
CGTTATACGATTTACCCAAAGACGCACTATGTCACGCCACGTGAGCGTATTCTTGATGCCATTGAAAGCATTAAAGACGA
GCTTGAAGTGCGTAAGAAGCAGCTGTTAGACAACAACAAACTCCTAGAAGAGCAACGTATCAGCCAGCGCACTCAATTTG
ACATTGAGATGATGAACGAGCTGGGTTTCTGTTCCGGTATCGAAAACTACTCTCGTTACTTAAGTGGACGAGCGGAGGGG
GAGCCGCCACCAACGCTATTTGACTACTTACCTCACGATGGCTTGCTGATCATCGACGAATCACACGTTACCGTACCGCA
AATTGGCGCGATGTATAAAGGTGACCGCTCACGTAAAGAGACGCTGGTGGAGTTTGGTTTCCGTTTGCCTTCTGCATTGG
ATAACCGCCCAATGAAGTTCGAAGAGTTCGAGGCGATTTCTCCACAGACAATATTTGTTTCTGCAACGCCGGGTAACTTC
GAACTTGAGAAGTCAGCCGATGAGATTGCGGACCAGGTTGTGCGTCCAACGGGTCTGCTCGATCCGGAATTAGAAGTTCG
CCCAGTTGCTACTCAGGTTGATGATCTGTTGTCTGAGATTCGAATTCGCGCAGCGCAAGACGAGCGTGTTCTTGTGACGA
CGCTAACCAAGCGTATGGCAGAAGACTTAACCGAATATCTGCACGAGCACGATGTGAAAGTTCGTTACCTTCACTCAGAC
ATTGATACGGTTGAGCGTGTAGAAATCATTCGCGACCTTCGTTTGGGTGAATTTGATGTGTTGGTTGGGATCAACTTATT
GCGAGAAGGCCTCGATATGCCAGAAGTGTCGCTGGTGGCAATCTTGGATGCAGATAAAGAAGGCTTCTTGCGTTCAGAGC
GTTCATTGATTCAGACCATTGGTCGTGCGGCTCGTAACATCAAAGGTAAAGCGATTCTTTACGCAGATTCGATCACTAAG
TCGATGAGGAAAGCGATGGACGAAACAGATCGTCGTCGCGAGAAGCAAAAAGCGTATAACGCTGAGATGGGTATTGAGCC
TCAAGCCTTGAAGCGAAATATTAAAGACATCATGGAGTTGGGGGATATCACCAAATCGAAGCGTCAGCGTAATACTAAGC
AAGTGCCGCTATCGAAAGTGGCAGAGCCTTCTCAGACTTACGAGATCATGTCTCCACAACAGTTGGAGAAGGAGATCAGT
CGTTTGGAAGCAGCGATGTACCAACACGCTCAAGATCTTGAATTTGAATTGGCGGCCCAGAAACGTGACGAGATTGAAAA
GCTTCGGGCTCAATTTATCGCGAACAGTTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.405

98.521

0.546
  uvrB Streptococcus pneumoniae R6

55.405

98.521

0.546
  uvrB Streptococcus pneumoniae D39

55.405

98.521

0.546