Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C9F11_RS11055 Genome accession   NZ_CP030771
Coordinates   2663638..2665782 (-) Length   714 a.a.
NCBI ID   WP_138959102.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2658638..2670782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS11040 (C9F11_10975) - 2659503..2660510 (-) 1008 WP_138959099.1 TerC family protein -
  C9F11_RS11045 (C9F11_10980) - 2660861..2662831 (-) 1971 WP_138959100.1 TerD family protein -
  C9F11_RS11050 (C9F11_10985) - 2662911..2663489 (-) 579 WP_138959101.1 TerD family protein -
  C9F11_RS11055 (C9F11_10990) uvrB 2663638..2665782 (-) 2145 WP_138959102.1 excinuclease ABC subunit UvrB Machinery gene
  C9F11_RS11060 (C9F11_10995) - 2665834..2666721 (-) 888 WP_138959103.1 MHYT domain-containing protein -
  C9F11_RS11065 (C9F11_11000) - 2666994..2667896 (+) 903 WP_138959104.1 glycerophosphodiester phosphodiesterase family protein -
  C9F11_RS11070 (C9F11_11005) - 2667975..2668553 (+) 579 WP_138959105.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C9F11_RS11075 (C9F11_11010) - 2668769..2670049 (+) 1281 WP_138966344.1 MFS transporter -
  C9F11_RS11080 (C9F11_11015) - 2670173..2670541 (-) 369 WP_138959106.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80180.20 Da        Isoelectric Point: 5.1329

>NTDB_id=260445 C9F11_RS11055 WP_138959102.1 2663638..2665782(-) (uvrB) [Streptomyces sp. YIM 121038]
MRPVSKIERTVAPFEVVSPFQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDDHLYVFPASHYVAGPERMAKAVDGIEKELADRLAELEKQGKMLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRDPGTPPHTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQTVYL
SATPGAYELSRSDGHVEQIIRPTGLVDPEVVVKSTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMAKAIDETNRRREKQIAYNKERGIDPQPLRKKINDIVSAIAREEVDTEQLLGTDYRKAKDGKGAKAPVPSLGK
AAAGAPAKAGKKSAKDKQVPTDKPATELAAQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=260445 C9F11_RS11055 WP_138959102.1 2663638..2665782(-) (uvrB) [Streptomyces sp. YIM 121038]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCGTTCCAGCCCAGTGGCGACCAGCC
GGCCGCCATTGCCGAGCTGGAGAAGCGCATCCGCGCAGGTGAGAAGGATGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCGGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCGACACTCGTCATGGCGCCGAACAAAACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGAGAGCTCCTGCCGAACAACGCGGTGGAGTACTTCGTCTCCTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACGAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTGCCGCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTCCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACCTCGCCTTCACCCGGGGCACGTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTGCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACGCTCCACCCGCTCACCGGC
GAGGTCATCAGCGACGACGACCACCTCTACGTCTTCCCGGCCTCGCACTACGTGGCGGGCCCCGAGCGCATGGCGAAGGC
GGTCGACGGCATCGAGAAGGAGCTCGCCGACCGCCTCGCGGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGCC
TGCGCATGCGCACGACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCGACCCCGGCACCCCGCCGCACACCCTGCTCGACTACTTCCCGGACGACTTCCTGCTCGTCCTCGACGA
GTCGCACGTCACCGTCCCCCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTCCCCTCCGCACTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGAAGCGCATCGGGCAGACCGTCTATCTG
TCGGCGACCCCGGGCGCGTACGAGCTGTCCCGCTCGGACGGACACGTGGAGCAGATCATCCGCCCCACCGGACTCGTCGA
CCCGGAGGTCGTCGTCAAGTCCACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTCGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAACTGGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTCCTGCGCGAGCTGCGGGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTCCTGCGCGAGGGCCTCGACCTGCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCCGGTCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGCGAAGGCCATCGACGAGACCAACCGCCGCCGGGAGAAGCAGATCGCGTACAACAA
GGAGCGGGGCATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTGTCGGCGATCGCGCGCGAGGAGGTCGACA
CCGAGCAGCTCCTCGGCACGGACTACCGCAAGGCGAAGGACGGCAAGGGCGCCAAGGCCCCGGTGCCCTCGCTCGGCAAG
GCGGCCGCCGGGGCGCCCGCCAAGGCGGGGAAGAAGTCCGCCAAGGACAAGCAGGTGCCCACGGACAAGCCCGCCACCGA
GCTGGCCGCGCAGATCGAGGAGATGACCGAGCGGATGCGCGCCGCCGCCGCGGACCTCCAGTTCGAGATCGCCGCACGGC
TGCGCGACGAGGTGTCGGAGATGAAGAAGGAACTGCGGCAGATGAAGGAGGCGGGCCTGGCGTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(671-703)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.854

97.059

0.552
  uvrB Streptococcus pneumoniae R6

56.854

97.059

0.552
  uvrB Streptococcus pneumoniae D39

56.854

97.059

0.552