Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DRF63_RS03560 Genome accession   NZ_CP030753
Coordinates   772891..774912 (-) Length   673 a.a.
NCBI ID   WP_005596970.1    Uniprot ID   A0ABM6X1M6
Organism   Actinobacillus pleuropneumoniae strain S4074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 767891..779912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRF63_RS03550 (DRF63_03550) pepP 769002..770288 (-) 1287 WP_005596967.1 Xaa-Pro aminopeptidase -
  DRF63_RS03555 (DRF63_03555) - 770714..772870 (-) 2157 WP_005596968.1 tetratricopeptide repeat protein -
  DRF63_RS03560 (DRF63_03560) uvrB 772891..774912 (-) 2022 WP_005596970.1 excinuclease ABC subunit UvrB Machinery gene
  DRF63_RS03570 (DRF63_03565) efeO 775089..775901 (+) 813 WP_005596972.1 iron uptake system protein EfeO -
  DRF63_RS03575 (DRF63_03570) efeB 775913..777106 (+) 1194 WP_005596974.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  DRF63_RS03580 (DRF63_03575) - 777117..777737 (+) 621 WP_005596976.1 hypothetical protein -
  DRF63_RS03585 (DRF63_03580) - 777776..778594 (-) 819 WP_005596978.1 PHP domain-containing protein -
  DRF63_RS03590 (DRF63_03585) - 778598..779188 (-) 591 WP_005596980.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76828.56 Da        Isoelectric Point: 5.1035

>NTDB_id=260228 DRF63_RS03560 WP_005596970.1 772891..774912(-) (uvrB) [Actinobacillus pleuropneumoniae strain S4074]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDKPKRGKQAVKVEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAEVRDKIGQLRAYLLEI

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=260228 DRF63_RS03560 WP_005596970.1 772891..774912(-) (uvrB) [Actinobacillus pleuropneumoniae strain S4074]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGCTAAATGACGGATTGGCGCATCAAACGTTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCTA
ATGTGATCGCTCAACTCAATCGTCCGGCAATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCCTTCTTCCCAGAAAATGCGGTGGAATACTTTGTCTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACCTTTATCGAAAAAGACGCGTCGATTAACGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACCATTGTAGTTGCTTCTGTTTCAGCCATTTACGGCTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGATCAACGAGAGATTCTCGCTCGCCTTGCCGAATTGCAATATACTCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCGGACGAAATTG
CATTACGTGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTGCCTCGCTATACTATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATTAA
ACAAGAGCTGGTGGAACGCCGCGAGTATTTCATCAAAGAAAATAAATTGTTGGAAGAACAACGTATTACTCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGCATTGAAAACTATTCACGCTATCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGACTATATGCCGGCGGACGGCTTGCTGATTATTGACGAAAGCCACGTTACCGT
GCCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCCAGAAAAGAAACGTTGGTGCAATACGGTTTCCGCTTGCCGTCTG
CATTGGATAACCGCCCGTTACGCTTTGAAGAATTTGAACGCCTAGCCCCACAGACAATTTATGTTTCGGCAACACCGGGC
AATTATGAATTAGAAAAATCAAACGGTGATGTGGTGGATCAAGTGGTTCGCCCAACGGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGAGTGTTAA
TTACTACGCTAACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCAGCTCGAAACCTGAACGGTAAAGCAATTCTTTACGGCGACCGCATT
ACTAACTCTATGCAAAAAGCGATTACCGAAACCGAACGCCGCCGAGAAAAACAACAAAAATACAACGAAGAACACGGTAT
TACTCCGCAAGCCCTCAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAGTCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTCAAACAACTT
GAGCAACAAATGCGAGATTTCGCTAAAGATTTAGAGTTCGAAAAAGCGGCTGAGGTAAGGGATAAGATTGGGCAGTTGAG
GGCGTATTTGCTAGAAATTTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(555-596)

Type III restriction enzyme, res subunit (ResIII)

(17-100)

UvrB interaction domain (UvrB_inter)

(162-252)

UvrB/uvrC motif (UVR)

(634-668)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.466

98.514

0.566
  uvrB Streptococcus pneumoniae R6

57.466

98.514

0.566
  uvrB Streptococcus pneumoniae D39

57.466

98.514

0.566