Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CXR48_RS16715 Genome accession   NZ_CP025341
Coordinates   3399821..3400510 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CMT-6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3394821..3405510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS16680 - 3395019..3395501 (-) 483 WP_024085863.1 flagellar protein FlgN -
  CXR48_RS16685 flgM 3395516..3395782 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CXR48_RS16690 - 3395852..3396271 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  CXR48_RS16695 comFC 3396345..3397034 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  CXR48_RS16700 - 3397040..3397324 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  CXR48_RS16705 comFA 3397382..3398767 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  CXR48_RS16710 - 3398875..3399723 (-) 849 WP_024085866.1 DegV family protein -
  CXR48_RS16715 degU 3399821..3400510 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CXR48_RS16720 degS 3400587..3401750 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CXR48_RS16725 - 3401973..3402620 (+) 648 WP_003151384.1 YigZ family protein -
  CXR48_RS16730 - 3402625..3403839 (+) 1215 WP_014305930.1 LCP family protein -
  CXR48_RS16735 - 3403929..3405005 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=260197 CXR48_RS16715 WP_003219701.1 3399821..3400510(-) (degU) [Bacillus velezensis strain CMT-6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=260197 CXR48_RS16715 WP_003219701.1 3399821..3400510(-) (degU) [Bacillus velezensis strain CMT-6]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment