Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CXP43_RS13085 Genome accession   NZ_CP025308
Coordinates   2641601..2641936 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lzh-a42     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2636601..2646936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP43_RS13065 (CXP43_13065) gcvT 2637207..2638307 (-) 1101 WP_014418366.1 glycine cleavage system aminomethyltransferase GcvT -
  CXP43_RS13070 (CXP43_13070) - 2638731..2640401 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  CXP43_RS13075 (CXP43_13075) - 2640423..2641217 (+) 795 WP_014418368.1 YqhG family protein -
  CXP43_RS13080 (CXP43_13080) sinI 2641394..2641567 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  CXP43_RS13085 (CXP43_13085) sinR 2641601..2641936 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CXP43_RS13090 (CXP43_13090) tasA 2641984..2642769 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  CXP43_RS13095 (CXP43_13095) sipW 2642834..2643418 (-) 585 WP_014418370.1 signal peptidase I SipW -
  CXP43_RS13100 (CXP43_13100) tapA 2643390..2644061 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  CXP43_RS13105 (CXP43_13105) - 2644320..2644649 (+) 330 WP_014418372.1 DUF3889 domain-containing protein -
  CXP43_RS13110 (CXP43_13110) - 2644690..2644869 (-) 180 WP_003153093.1 YqzE family protein -
  CXP43_RS13115 (CXP43_13115) comGG 2644926..2645303 (-) 378 WP_014418373.1 competence type IV pilus minor pilin ComGG Machinery gene
  CXP43_RS13120 (CXP43_13120) comGF 2645304..2645804 (-) 501 WP_014418374.1 competence type IV pilus minor pilin ComGF -
  CXP43_RS13125 (CXP43_13125) comGE 2645713..2646027 (-) 315 WP_032863566.1 competence type IV pilus minor pilin ComGE Machinery gene
  CXP43_RS13130 (CXP43_13130) comGD 2646011..2646448 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  CXP43_RS13135 (CXP43_13135) comGC 2646438..2646746 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=259975 CXP43_RS13085 WP_003153104.1 2641601..2641936(+) (sinR) [Bacillus velezensis strain Lzh-a42]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=259975 CXP43_RS13085 WP_003153104.1 2641601..2641936(+) (sinR) [Bacillus velezensis strain Lzh-a42]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment