Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CSC44_RS11245 Genome accession   NZ_CP030327
Coordinates   2347171..2347815 (+) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain AR_458     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2342171..2352815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC44_RS11220 (CSC44_2263) - 2342663..2344144 (-) 1482 WP_023102830.1 AAA family ATPase -
  CSC44_RS11225 (CSC44_2264) - 2344223..2344561 (+) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  CSC44_RS11230 (CSC44_2265) coq7 2344661..2345308 (+) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  CSC44_RS11235 (CSC44_2266) speD 2345363..2346157 (-) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  CSC44_RS11240 (CSC44_2267) - 2346477..2346899 (-) 423 WP_003085219.1 OsmC family protein -
  CSC44_RS11245 (CSC44_2268) crp 2347171..2347815 (+) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  CSC44_RS11250 (CSC44_2269) trpC 2347877..2348713 (-) 837 WP_003085205.1 indole-3-glycerol phosphate synthase TrpC -
  CSC44_RS11255 (CSC44_2270) trpD 2348710..2349759 (-) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  CSC44_RS11260 (CSC44_2271) - 2349761..2350366 (-) 606 WP_003101640.1 aminodeoxychorismate/anthranilate synthase component II -
  CSC44_RS11270 (CSC44_2273) - 2350773..2351057 (-) 285 WP_023102828.1 hypothetical protein -
  CSC44_RS31995 - 2352059..2352448 (-) 390 Protein_2182 phage tail protein -
  CSC44_RS11280 (CSC44_2275) - 2352544..2352774 (-) 231 WP_023102826.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=259867 CSC44_RS11245 WP_003085214.1 2347171..2347815(+) (crp) [Pseudomonas aeruginosa strain AR_458]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=259867 CSC44_RS11245 WP_003085214.1 2347171..2347815(+) (crp) [Pseudomonas aeruginosa strain AR_458]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGGAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505