Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   CV094_RS08315 Genome accession   NZ_CP025266
Coordinates   1736514..1737332 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii isolate SMC_Paed_Ab_BL01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731514..1742332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV094_RS08300 (CV094_08300) pilE 1731731..1732156 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  CV094_RS08305 (CV094_08305) pilY2 1732153..1732635 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  CV094_RS08310 (CV094_08310) pilY1 1732648..1736502 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  CV094_RS08315 (CV094_08315) pilX 1736514..1737332 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CV094_RS08320 (CV094_08320) pilW 1737329..1738330 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  CV094_RS08325 (CV094_08325) pilV 1738331..1738891 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  CV094_RS08330 (CV094_08330) fimU 1738885..1739358 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CV094_RS08335 (CV094_08335) ispH 1739528..1740478 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CV094_RS08340 (CV094_08340) gmk 1740601..1741230 (+) 630 WP_000015937.1 guanylate kinase -
  CV094_RS08345 (CV094_08345) rpoZ 1741303..1741581 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  CV094_RS08350 (CV094_08350) - 1741620..1741749 (+) 130 Protein_1618 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=259659 CV094_RS08315 WP_000149374.1 1736514..1737332(-) (pilX) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=259659 CV094_RS08315 WP_000149374.1 1736514..1737332(-) (pilX) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment