Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DOP62_RS05450 Genome accession   NZ_CP030139
Coordinates   1143187..1143549 (-) Length   120 a.a.
NCBI ID   WP_208676635.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1138187..1148549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS05445 (DOP62_06450) - 1142655..1143161 (-) 507 WP_208676637.1 chemotaxis protein CheW -
  DOP62_RS05450 (DOP62_06445) pilH 1143187..1143549 (-) 363 WP_208676635.1 response regulator transcription factor Machinery gene
  DOP62_RS05455 (DOP62_06440) - 1143602..1144825 (-) 1224 WP_208676633.1 response regulator -
  DOP62_RS05460 (DOP62_06435) - 1145391..1146164 (+) 774 WP_208676631.1 response regulator transcription factor -
  DOP62_RS05465 (DOP62_06430) - 1146177..1147418 (+) 1242 WP_208676629.1 cell wall metabolism sensor histidine kinase WalK -
  DOP62_RS05470 (DOP62_06425) - 1147433..1148164 (+) 732 WP_208676627.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13190.15 Da        Isoelectric Point: 4.5271

>NTDB_id=259283 DOP62_RS05450 WP_208676635.1 1143187..1143549(-) (pilH) [Synechococcus elongatus PCC 11801]
MSTVLVVEDTASEMELITTYLQASGYTVIGANNAQDALSKVDLYKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVTKPFKQEDLVKAVRSVDS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=259283 DOP62_RS05450 WP_208676635.1 1143187..1143549(-) (pilH) [Synechococcus elongatus PCC 11801]
ATGAGCACAGTGCTGGTTGTTGAAGATACGGCTTCCGAAATGGAGCTGATTACCACTTACCTACAGGCCAGTGGCTACAC
CGTGATTGGGGCGAATAACGCCCAAGATGCTTTAAGTAAGGTGGATTTGTACAAACCAGATGTCGTGGTCACGGATGTGG
TGATGCCTGGCATGAGTGGTTTTGAACTCTGCCGCAGCCTGAAGAAAAATCCTGAGACTGAAAAACTGCCGGTGATTGTC
TGCAGTTCCAAAAATCAGGAAATCGATCGGTTGTGGGCGATGAAGCAGGGAGCCGATGCTTACGTAACCAAGCCTTTTAA
ACAAGAGGATTTGGTGAAAGCTGTTCGTTCTGTTGACTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.61

98.333

0.458
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367