Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DP112_RS02920 Genome accession   NZ_CP030125
Coordinates   566205..566888 (+) Length   227 a.a.
NCBI ID   WP_114866298.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 561205..571888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS02900 (DP112_02900) - 561282..562793 (+) 1512 WP_114866294.1 ABC transporter permease/substrate-binding protein -
  DP112_RS02905 (DP112_02905) - 562803..563564 (+) 762 WP_114866295.1 nuclear transport factor 2 family protein -
  DP112_RS02910 (DP112_02910) - 563708..564838 (+) 1131 WP_114866296.1 aminotransferase -
  DP112_RS02915 (DP112_02915) - 564848..566035 (-) 1188 WP_114866297.1 DUF2974 domain-containing protein -
  DP112_RS02920 (DP112_02920) braR 566205..566888 (+) 684 WP_114866298.1 response regulator transcription factor Regulator
  DP112_RS02925 (DP112_02925) - 566881..567873 (+) 993 WP_114866299.1 sensor histidine kinase -
  DP112_RS02930 (DP112_02930) - 567969..568727 (+) 759 WP_114866300.1 ABC transporter ATP-binding protein -
  DP112_RS02935 (DP112_02935) - 568729..570729 (+) 2001 WP_114866301.1 FtsX-like permease family protein -
  DP112_RS02940 (DP112_02940) - 570905..571069 (+) 165 WP_114866302.1 hypothetical protein -
  DP112_RS02945 (DP112_02945) - 571066..571383 (+) 318 WP_114866303.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26524.71 Da        Isoelectric Point: 4.6947

>NTDB_id=258937 DP112_RS02920 WP_114866298.1 566205..566888(+) (braR) [Streptococcus suis strain HA1003]
MQKILLIEDDKTISQLVAKNLRNWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEVSLDLKTMQVSYGQAVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=258937 DP112_RS02920 WP_114866298.1 566205..566888(+) (braR) [Streptococcus suis strain HA1003]
ATGCAGAAAATTCTTCTTATCGAGGACGATAAAACGATTAGCCAACTAGTTGCTAAAAATTTGAGAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTAATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTTTGCGGCGAACTTACGATTTTGTAGGTGAACAAAGTCTACTCTGGTTTGAAGAGG
TATCCTTGGATTTGAAGACTATGCAGGTGTCATATGGACAGGCTGTAGAGGAGTTGACACGAAATGAATTTCAGATATTA
CGGGTGCTTTTTGAGCATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

38.865

100

0.392
  micA Streptococcus pneumoniae Cp1015

37.555

100

0.379

Multiple sequence alignment