Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DP112_RS02575 Genome accession   NZ_CP030125
Coordinates   500332..500976 (+) Length   214 a.a.
NCBI ID   WP_024385031.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 495332..505976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS02565 (DP112_02565) - 497270..498679 (+) 1410 WP_114866269.1 LPXTG cell wall anchor domain-containing protein -
  DP112_RS02570 (DP112_02570) - 499461..500168 (-) 708 WP_029743302.1 CPBP family intramembrane glutamic endopeptidase -
  DP112_RS02575 (DP112_02575) scnR 500332..500976 (+) 645 WP_024385031.1 response regulator transcription factor Regulator
  DP112_RS02580 (DP112_02580) - 500979..502337 (+) 1359 WP_114866270.1 HAMP domain-containing sensor histidine kinase -
  DP112_RS02585 (DP112_02585) - 502630..503175 (+) 546 WP_114867003.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DP112_RS02590 (DP112_02590) - 503233..505935 (+) 2703 WP_114866271.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24564.67 Da        Isoelectric Point: 4.8919

>NTDB_id=258933 DP112_RS02575 WP_024385031.1 500332..500976(+) (scnR) [Streptococcus suis strain HA1003]
MAKIMVVEDDIVISQVVCEFLKDHGYEVTHISDGKIALETFREESFDLIVLDIMIPSMTGLEVLQEIRKTSKIPILMLTA
MDDEYTQLVSFNQLISDYVVKPFSPIILVKRIENILRGEGDIIEAADIQIHPSSGAVYMAEEEVQLTKKEYEILLYLAKR
RGKIVNRDHLMLGIWGYTELDSRVLDNHIKNLRKKLPSLPLRTVIGRGYQVEEF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=258933 DP112_RS02575 WP_024385031.1 500332..500976(+) (scnR) [Streptococcus suis strain HA1003]
ATGGCGAAAATTATGGTTGTAGAAGATGATATTGTTATCAGTCAAGTAGTTTGTGAATTTCTAAAGGATCACGGCTACGA
AGTGACCCATATTTCCGACGGAAAAATTGCACTTGAAACATTTCGAGAAGAATCATTTGATTTGATTGTATTGGACATTA
TGATACCGTCCATGACAGGATTGGAAGTCCTACAGGAGATTCGTAAGACATCAAAAATTCCAATTCTTATGTTAACGGCA
ATGGATGACGAATACACACAATTGGTTAGCTTCAATCAACTGATTAGTGACTACGTTGTAAAACCTTTTTCGCCGATTAT
TCTTGTGAAACGCATTGAAAATATTTTGCGTGGTGAAGGTGATATTATAGAAGCGGCCGACATCCAAATCCATCCGTCCA
GTGGAGCGGTTTATATGGCAGAAGAAGAAGTACAATTAACGAAAAAAGAATACGAGATTTTACTGTACTTGGCAAAACGA
CGTGGAAAAATTGTCAATCGTGATCATCTAATGCTAGGAATTTGGGGCTATACAGAACTAGATAGCCGAGTTTTGGACAA
TCATATCAAGAATCTACGTAAGAAGTTACCATCTCTTCCTTTACGAACGGTAATTGGTCGAGGTTATCAGGTTGAGGAAT
TCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.739

100

0.402
  micA Streptococcus pneumoniae Cp1015

37.281

100

0.397
  vicR Streptococcus mutans UA159

35.47

100

0.388