Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DP111_RS00395 Genome accession   NZ_CP030124
Coordinates   68029..68619 (+) Length   196 a.a.
NCBI ID   WP_015646243.1    Uniprot ID   -
Organism   Streptococcus suis strain SH1510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63029..73619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP111_RS00385 (DP111_00385) - 64412..65935 (+) 1524 WP_043032926.1 quinol oxidase -
  DP111_RS00390 (DP111_00390) hexB 66053..67990 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  DP111_RS00395 (DP111_00395) ruvA 68029..68619 (+) 591 WP_015646243.1 Holliday junction branch migration protein RuvA Machinery gene
  DP111_RS00400 (DP111_00400) - 68873..69442 (+) 570 WP_024394300.1 DNA-3-methyladenine glycosylase I -
  DP111_RS00405 (DP111_00405) cinA 69479..70660 (+) 1182 WP_024394301.1 competence/damage-inducible protein A Machinery gene
  DP111_RS00410 (DP111_00410) recA 70712..71863 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  DP111_RS00415 (DP111_00415) spx 72099..72497 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DP111_RS00420 (DP111_00420) - 72597..72863 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DP111_RS00425 (DP111_00425) ruvX 72863..73282 (+) 420 WP_032513707.1 Holliday junction resolvase RuvX -
  DP111_RS00430 (DP111_00430) - 73294..73614 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21734.09 Da        Isoelectric Point: 5.3292

>NTDB_id=258807 DP111_RS00395 WP_015646243.1 68029..68619(+) (ruvA) [Streptococcus suis strain SH1510]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=258807 DP111_RS00395 WP_015646243.1 68029..68619(+) (ruvA) [Streptococcus suis strain SH1510]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTTCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGACGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGGCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403