Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CU648_RS06340 Genome accession   NZ_CP025122
Coordinates   1191018..1191476 (+) Length   152 a.a.
NCBI ID   WP_000804868.1    Uniprot ID   A0A0J1HZV6
Organism   Bacillus sp. HBCD-sjtu     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186018..1196476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU648_RS06320 (CU648_06320) - 1186675..1186911 (+) 237 WP_000283747.1 hypothetical protein -
  CU648_RS06330 (CU648_06330) - 1187085..1189193 (-) 2109 WP_000423561.1 polyphosphate kinase -
  CU648_RS06335 (CU648_06335) ppx 1189302..1190840 (-) 1539 WP_101194838.1 exopolyphosphatase -
  CU648_RS06340 (CU648_06340) kre 1191018..1191476 (+) 459 WP_000804868.1 YkyB family protein Regulator
  CU648_RS06345 (CU648_06345) - 1191508..1192170 (-) 663 WP_000922490.1 YkyA family protein -
  CU648_RS06355 (CU648_06355) - 1192825..1193466 (-) 642 WP_000680827.1 diguanylate cyclase domain-containing protein -
  CU648_RS06360 (CU648_06360) - 1193631..1193864 (+) 234 WP_000939450.1 SPP1 phage holin family protein -
  CU648_RS06365 (CU648_06365) - 1193896..1194396 (-) 501 WP_017561144.1 hypothetical protein -
  CU648_RS06370 (CU648_06370) - 1194821..1196362 (+) 1542 WP_000445738.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17787.52 Da        Isoelectric Point: 10.6793

>NTDB_id=258479 CU648_RS06340 WP_000804868.1 1191018..1191476(+) (kre) [Bacillus sp. HBCD-sjtu]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=258479 CU648_RS06340 WP_000804868.1 1191018..1191476(+) (kre) [Bacillus sp. HBCD-sjtu]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAAACAGCTTTAGAACGCTTAATTACTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTCTCAAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTACTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTCGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCGCTAAAAC
AAGAAAAAAAATTAAGTGAGCCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1HZV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment