Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CW740_RS00875 Genome accession   NZ_CP025120
Coordinates   180638..181036 (+) Length   132 a.a.
NCBI ID   WP_018623445.1    Uniprot ID   -
Organism   Kangiella profundi strain FT102     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 175638..186036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW740_RS00855 (CW740_00855) ruvX 177429..177866 (-) 438 WP_106645780.1 Holliday junction resolvase RuvX -
  CW740_RS00860 (CW740_00860) - 177866..178426 (-) 561 WP_106645781.1 YqgE/AlgH family protein -
  CW740_RS00865 (CW740_00865) - 178474..179397 (-) 924 WP_106645782.1 energy transducer TonB -
  CW740_RS00870 (CW740_00870) gshB 179448..180398 (-) 951 WP_106645783.1 glutathione synthase -
  CW740_RS00875 (CW740_00875) pilG 180638..181036 (+) 399 WP_018623445.1 twitching motility response regulator PilG Regulator
  CW740_RS00880 (CW740_00880) - 181073..181438 (+) 366 WP_106645784.1 response regulator transcription factor -
  CW740_RS00885 (CW740_00885) - 181445..181993 (+) 549 WP_106645785.1 chemotaxis protein CheW -
  CW740_RS00890 (CW740_00890) - 182036..184378 (+) 2343 WP_106645786.1 methyl-accepting chemotaxis protein -
  CW740_RS00895 (CW740_00895) - 184393..185268 (+) 876 WP_227523874.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14635.97 Da        Isoelectric Point: 8.9984

>NTDB_id=258456 CW740_RS00875 WP_018623445.1 180638..181036(+) (pilG) [Kangiella profundi strain FT102]
MSDLFKGLKVMVVDDSKTIRRTAETLLKKQGCDVVTGVDGYDALSKIADYKPDIIFIDIMMPRLDGYQTCALVKSNQNFK
NTPIIMLSSKDGVFDKAKGRVVGSDNYLTKPFSRDELLNAISQQLQNKPAVA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=258456 CW740_RS00875 WP_018623445.1 180638..181036(+) (pilG) [Kangiella profundi strain FT102]
ATGAGTGATTTGTTCAAAGGTTTGAAAGTGATGGTGGTGGACGATAGTAAAACTATTCGCCGCACCGCTGAGACACTTTT
GAAAAAACAGGGATGTGATGTTGTAACCGGTGTCGATGGATATGATGCTCTATCCAAGATTGCCGACTATAAGCCAGATA
TCATTTTTATTGATATTATGATGCCTCGTCTTGACGGGTATCAAACCTGTGCTCTTGTTAAAAGTAACCAGAATTTCAAA
AACACCCCAATTATAATGCTGTCCAGTAAAGACGGGGTGTTTGATAAGGCCAAGGGGCGGGTCGTTGGTTCTGACAACTA
TCTGACCAAACCATTTAGCCGTGACGAATTATTAAACGCCATATCCCAGCAGTTGCAAAACAAACCGGCTGTGGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.6

94.697

0.697
  vicR Streptococcus mutans UA159

44.068

89.394

0.394
  pilH Synechocystis sp. PCC 6803

41.525

89.394

0.371

Multiple sequence alignment