Detailed information NTG0025828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA14_RS07015
• Genome accession: NC_008463
• Coordinates: 1499097..1500101 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa UCBPP-PA14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1494097..1505101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA14_RS06985 (PA14_17410)	fghA	1494189..1495040 (+)	852	WP_003138034.1	S-formylglutathione hydrolase	-
PA14_RS06990 (PA14_17420)	ispF	1495111..1495584 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA14_RS06995 (PA14_17440)	truD	1495581..1496648 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PA14_RS07000 (PA14_17450)	surE	1496636..1497385 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA14_RS07005 (PA14_17460)	-	1497418..1498053 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA14_RS07010 (PA14_17470)	-	1498099..1498992 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA14_RS07015 (PA14_17480)	rpoS	1499097..1500101 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA14_RS07020 (PA14_17490)	fdxA	1500527..1500850 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PA14_RS07025 (PA14_17500)	mutS	1500917..1503484 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PA14_RS07030 (PA14_17510)	-	1503610..1504617 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=25828 PA14_RS07015 WP_003113871.1 1499097..1500101(+) (rpoS) [Pseudomonas aeruginosa UCBPP-PA14]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=25828 PA14_RS07015 WP_003113871.1 1499097..1500101(+) (rpoS) [Pseudomonas aeruginosa UCBPP-PA14]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653