Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   BVQ_RS13045 Genome accession   NZ_CP025079
Coordinates   2630976..2631413 (-) Length   145 a.a.
NCBI ID   WP_012117983.1    Uniprot ID   -
Organism   Bacillus velezensis strain QST713     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625976..2636413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVQ_RS12995 (BVQ_12985) sinI 2626360..2626533 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BVQ_RS13000 (BVQ_12990) sinR 2626567..2626902 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BVQ_RS13005 (BVQ_12995) tasA 2626950..2627735 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BVQ_RS13010 (BVQ_13000) sipW 2627800..2628384 (-) 585 WP_015240205.1 signal peptidase I SipW -
  BVQ_RS13015 (BVQ_13005) tapA 2628356..2629027 (-) 672 WP_053573199.1 amyloid fiber anchoring/assembly protein TapA -
  BVQ_RS13020 (BVQ_13010) - 2629286..2629615 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  BVQ_RS13025 (BVQ_13015) - 2629655..2629834 (-) 180 WP_003153093.1 YqzE family protein -
  BVQ_RS13030 (BVQ_13020) comGG 2629891..2630268 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  BVQ_RS13035 (BVQ_13025) comGF 2630269..2630769 (-) 501 WP_256052909.1 competence type IV pilus minor pilin ComGF -
  BVQ_RS13040 (BVQ_13030) comGE 2630678..2630992 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  BVQ_RS13045 (BVQ_13035) comGD 2630976..2631413 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  BVQ_RS13050 (BVQ_13040) comGC 2631403..2631669 (-) 267 WP_053573229.1 competence type IV pilus major pilin ComGC Machinery gene
  BVQ_RS13055 (BVQ_13045) comGB 2631716..2632753 (-) 1038 WP_053573197.1 competence type IV pilus assembly protein ComGB Machinery gene
  BVQ_RS13060 (BVQ_13050) comGA 2632740..2633810 (-) 1071 WP_053573196.1 competence type IV pilus ATPase ComGA Machinery gene
  BVQ_RS13065 (BVQ_13055) - 2634003..2634953 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  BVQ_RS13070 (BVQ_13060) - 2635099..2636400 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16286.74 Da        Isoelectric Point: 10.2475

>NTDB_id=258209 BVQ_RS13045 WP_012117983.1 2630976..2631413(-) (comGD) [Bacillus velezensis strain QST713]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=258209 BVQ_RS13045 WP_012117983.1 2630976..2631413(-) (comGD) [Bacillus velezensis strain QST713]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATCCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.849

100

0.572

Multiple sequence alignment