Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DK875_RS05150 Genome accession   NZ_CP030020
Coordinates   1064886..1066871 (-) Length   661 a.a.
NCBI ID   WP_002935167.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059886..1071871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS05150 (DK875_05390) uvrB 1064886..1066871 (-) 1986 WP_002935167.1 excinuclease ABC subunit UvrB Machinery gene
  DK875_RS05155 (DK875_05395) - 1066868..1067527 (-) 660 WP_002935168.1 hypothetical protein -
  DK875_RS05160 (DK875_05400) - 1067728..1069926 (+) 2199 WP_002935169.1 ABC transporter substrate-binding protein/permease -
  DK875_RS05165 (DK875_05405) - 1069926..1070666 (+) 741 WP_002935170.1 amino acid ABC transporter ATP-binding protein -
  DK875_RS05170 (DK875_05410) - 1070722..1071213 (-) 492 WP_002935171.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75624.63 Da        Isoelectric Point: 4.5976

>NTDB_id=258162 DK875_RS05150 WP_002935167.1 1064886..1066871(-) (uvrB) [Streptococcus suis strain ISU2514]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAA
EVLDFELAAQIRDMVIELKNM

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=258162 DK875_RS05150 WP_002935167.1 1064886..1066871(-) (uvrB) [Streptococcus suis strain ISU2514]
ATGATAAATCGAAATACTGAAAACCAATTTAAACTTGTTTCTAAATACTCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAACATCGAGGGGGGCGAAAAAGCTCAGATTCTCATGGGGGCGACTGGTACGGGTAAGACCTACACCA
TGAGTCAGGTCATTGCCCGTGTCAATAAGCCCACTCTTGTCATCGCCCACAACAAGACTCTAGCTGGTCAGCTCTACAGC
GAGTTCAAGGAATTCTTCCCAGAAAATGCGGTCGAATACTTCGTATCTTACTATGATTACTACCAGCCAGAAGCCTATGT
ACCGTCTAGCGATACCTATATCGAGAAGGACAGTTCGGTCAATGATGAGATTGACAAACTTCGTCATTCAGCGACTTCAG
CACTTCTCGAACGAAATGATGTCATCGTTGTGGCTTCGGTTTCCTGTATCTACGGTTTGGGATCGCCCAAGGAATATTCA
GATAGCGTGGTCAGCCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTGCTCAACTCTCTGGTAGATATTCAGTTTGA
GCGCAACGACATCGACTTCCAACGGGGGCGTTTCCGTGTACGTGGAGATGTGGTGGAGATTTTCCCAGCTTCCCGTGATG
AACACGCCTTTCGTGTGGAGTTTTTTGGTGATGAAATCGACCGCATTCGTGAGATTGAAAGCCTGACAGGGAAGGTTTTG
GGCGATGTGGATCACTTGGCCATTTTCCCTGCCACCCATTTCGTGACCAACGATGATCACATGGAAACGGCTATTGCCAA
GATTCAGGCGGAACTGGAAGAGCAGCTCAAGATCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GGACCGACTACGACATCGAGATGCTTCGGGAAATGGGTTACACCAACGGAGTTGAGAACTATTCACGACACATGGACGGG
CGAAGCGAGGGCGAGCCTCCGTACACACTGCTGGACTTTTTCCCTGAAGACTACCTGATTATGATTGACGAGAGCCACAT
GACCATGGGGCAGATTAAGGGGATGTACAATGGTGACCGCTCACGCAAGGAGATGTTGGTCAACTATGGCTTCCGCCTCC
CGAGTGCACTGGACAATCGTCCGCTGCGCAGGGAAGAATTTGAGAGCCATGTCCACCAGATTGTCTATGTATCTGCGACG
CCGGGTGACTATGAAATGGAGCAGACCGATACCGTTGTCGAGCAGATCATTCGGCCGACAGGGCTTCTGGATCCAGAAGT
GGAAGTCCGTCCAACCATGGGCCAAATGGATGACCTCTTGGGCGAAATCAATGCCCGTGTTGAGAAAGGTGAGCGGACCT
TTATCACTACCCTGACCAAGAAAATGGCAGAGGACTTGACTGACTACCTGAAAGAAATGGGCGTCAAGGTCAAGTATATG
CACTCGGATATCAAGACCTTGGAGCGTACGGAGATTATTCGTGATTTGCGTTTGGGTGTCTTTGATGTTCTGATAGGGAT
TAACCTCTTGCGTGAGGGGATTGATGTGCCAGAAGTCAGTCTGGTTGCAATCTTGGACGCTGACAAGGAAGGCTTCCTCC
GAAATGAGCGTGGACTCATCCAGACAATCGGTCGGGCAGCTCGTAATTCTGAAGGTCATGTGATTATGTATGCGGACAAG
GTTACCGAGTCTATGCGCAAGGCTATGGAGGAAACAGCCCGCCGCCGTCAAATCCAGATGGCCTATAATGAAGAACATGG
AATCATTCCACAGACCATTAAGAAAGAAATCCGTGACCTGATAAGCGTGACCAAGGCTGTCACTCAGGACAAGGAAGAAG
TAGTGGACTTCAATGCCCTCAACAAAGACGAACGCAAGGCTATGATCAAGAAACTGGAAGGTCAAATGCAGGAAGCCGCA
GAAGTGCTTGACTTTGAACTGGCAGCCCAGATTCGTGATATGGTCATTGAGTTGAAGAATATGTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(626-660)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

Type III restriction enzyme, res subunit (ResIII)

(20-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

90.923

100

0.909
  uvrB Streptococcus pneumoniae D39

90.923

100

0.909
  uvrB Streptococcus pneumoniae TIGR4

90.772

100

0.908