Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DK875_RS04725 Genome accession   NZ_CP030020
Coordinates   973539..974237 (+) Length   232 a.a.
NCBI ID   WP_002935052.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 968539..979237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS04690 (DK875_04895) - 968826..969050 (-) 225 WP_002935042.1 helix-turn-helix domain-containing protein -
  DK875_RS04695 (DK875_04900) - 969216..969950 (-) 735 WP_002935043.1 ABC transporter permease -
  DK875_RS04700 (DK875_04905) - 969934..970698 (-) 765 WP_002935044.1 ABC transporter permease -
  DK875_RS04705 (DK875_04910) - 970700..971608 (-) 909 WP_002935046.1 ABC transporter ATP-binding protein -
  DK875_RS04710 (DK875_04915) - 971718..972776 (-) 1059 Protein_906 ATP-binding cassette domain-containing protein -
  DK875_RS04715 (DK875_04920) - 972845..973000 (-) 156 WP_002935048.1 lacticin 481 family lantibiotic -
  DK875_RS04720 (DK875_04925) - 973029..973184 (-) 156 WP_002935049.1 lacticin 481 family lantibiotic -
  DK875_RS04725 (DK875_04930) scnR 973539..974237 (+) 699 WP_002935052.1 response regulator transcription factor Regulator
  DK875_RS04730 (DK875_04935) - 974253..975608 (+) 1356 WP_002935054.1 sensor histidine kinase KdpD -
  DK875_RS04735 (DK875_04940) - 975731..977590 (-) 1860 WP_002935056.1 SAG1250 family conjugative relaxase -
  DK875_RS04740 (DK875_04945) mobC 977577..977942 (-) 366 WP_002935058.1 plasmid mobilization relaxosome protein MobC -
  DK875_RS04745 (DK875_04950) - 977952..978311 (-) 360 WP_002935059.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26300.45 Da        Isoelectric Point: 5.1495

>NTDB_id=258159 DK875_RS04725 WP_002935052.1 973539..974237(+) (scnR) [Streptococcus suis strain ISU2514]
MGFEIQLLNKHILIVDDDIALSESIKEVLMSRGFKNISFAYSISEGIDIFSVSQIDLIILDVMLPDGEGYLLSKYVRKTS
DVPILFLTAKNNPDDEINGLDSGGDDYVTKPFLPKSLTYRIMALLRRAYRDESELIELTDCTIDLNNASVKKSNQNFSLT
PTEIQILRKLFTNKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=258159 DK875_RS04725 WP_002935052.1 973539..974237(+) (scnR) [Streptococcus suis strain ISU2514]
ATGGGTTTTGAAATACAATTGTTGAATAAACATATACTAATTGTGGATGATGACATCGCATTAAGCGAATCAATCAAAGA
AGTGCTCATGAGTCGTGGCTTCAAAAATATTAGTTTTGCTTATAGTATTAGCGAAGGTATTGATATTTTTTCAGTATCTC
AAATTGATTTAATTATTCTAGATGTCATGTTACCAGATGGTGAAGGCTATTTACTTTCCAAATATGTAAGAAAGACATCT
GATGTCCCAATTCTATTCTTAACTGCTAAAAATAATCCTGATGATGAAATAAATGGGCTTGACTCAGGAGGAGATGACTA
TGTTACAAAGCCATTTTTACCTAAATCTTTAACTTACCGTATAATGGCATTGTTGAGAAGAGCTTACCGAGATGAATCTG
AACTCATTGAATTAACAGATTGCACAATTGACTTGAATAATGCAAGCGTAAAAAAAAGTAATCAAAATTTTTCACTGACC
CCTACTGAAATTCAAATTCTTAGAAAGCTATTTACCAACAAAAATTACATCGTTTCCACAGAGACAATATGTGATACTAT
TTGGGGATTAGATAGCTTTGGATATGAAAAATCCTTAATGGTCCATATACGCAATATTCGAGAAAAAATCGAAATTATAC
CTTCCAAGCCAAAGCATCTAATTACCGTTAAAGGGCTTGGATATAAACTTGCTATTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.152

96.121

0.405
  vicR Streptococcus mutans UA159

38.428

98.707

0.379
  micA Streptococcus pneumoniae Cp1015

37.719

98.276

0.371