Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DK235_RS04335 Genome accession   NZ_CP030017
Coordinates   884076..884774 (+) Length   232 a.a.
NCBI ID   WP_002935052.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU1606     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 879076..889774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK235_RS04315 (DK235_04475) - 879877..882657 (-) 2781 WP_024394871.1 type 2 lanthipeptide synthetase LanM family protein -
  DK235_RS04320 (DK235_04480) - 882676..882843 (-) 168 WP_074391117.1 lacticin 481 family lantibiotic -
  DK235_RS04325 (DK235_04485) - 883382..883537 (-) 156 WP_002935048.1 lacticin 481 family lantibiotic -
  DK235_RS04330 (DK235_04490) - 883566..883721 (-) 156 WP_002935049.1 lacticin 481 family lantibiotic -
  DK235_RS04335 (DK235_04495) scnR 884076..884774 (+) 699 WP_002935052.1 response regulator transcription factor Regulator
  DK235_RS04340 (DK235_04500) - 884847..886145 (+) 1299 WP_235443854.1 sensor histidine kinase KdpD -
  DK235_RS04345 (DK235_04505) - 886268..888127 (-) 1860 WP_053865953.1 SAG1250 family conjugative relaxase -
  DK235_RS04350 (DK235_04510) - 888114..888479 (-) 366 WP_053865954.1 MobC family plasmid mobilization relaxosome protein -
  DK235_RS04355 (DK235_04515) - 888489..888848 (-) 360 WP_000529541.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26300.45 Da        Isoelectric Point: 5.1495

>NTDB_id=258068 DK235_RS04335 WP_002935052.1 884076..884774(+) (scnR) [Streptococcus suis strain ISU1606]
MGFEIQLLNKHILIVDDDIALSESIKEVLMSRGFKNISFAYSISEGIDIFSVSQIDLIILDVMLPDGEGYLLSKYVRKTS
DVPILFLTAKNNPDDEINGLDSGGDDYVTKPFLPKSLTYRIMALLRRAYRDESELIELTDCTIDLNNASVKKSNQNFSLT
PTEIQILRKLFTNKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=258068 DK235_RS04335 WP_002935052.1 884076..884774(+) (scnR) [Streptococcus suis strain ISU1606]
ATGGGTTTTGAAATACAATTGTTGAATAAACATATACTAATTGTGGATGATGACATCGCATTAAGCGAATCAATCAAAGA
AGTGCTCATGAGTCGTGGCTTCAAAAATATTAGTTTTGCTTATAGTATTAGCGAAGGTATTGATATTTTTTCAGTATCTC
AAATTGATTTAATTATTCTAGATGTCATGTTACCAGATGGTGAAGGCTATTTACTTTCCAAATATGTAAGAAAGACATCT
GATGTCCCAATTCTATTCTTAACTGCTAAAAATAATCCTGATGATGAAATAAATGGGCTTGACTCAGGAGGAGATGACTA
TGTTACAAAGCCATTTTTACCTAAATCTTTAACTTACCGTATAATGGCATTGTTGAGAAGAGCTTACCGAGATGAATCTG
AACTCATTGAATTAACAGATTGCACAATTGACTTGAATAATGCAAGCGTAAAAAAAAGTAATCAAAATTTTTCACTGACC
CCTACTGAAATTCAAATTCTTAGAAAGCTATTTACCAACAAAAATTACATCGTTTCCACAGAGACAATATGTGATACTAT
TTGGGGATTAGATAGCTTTGGATATGAAAAATCCTTAATGGTCCATATACGCAATATTCGAGAAAAAATCGAAATTATAC
CTTCCAAGCCAAAGCATCTAATTACCGTTAAAGGGCTTGGATATAAACTTGCTATTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.152

96.121

0.405
  vicR Streptococcus mutans UA159

38.428

98.707

0.379
  micA Streptococcus pneumoniae Cp1015

37.719

98.276

0.371