Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   A7J09_RS07100 Genome accession   NZ_CP030015
Coordinates   1467662..1469041 (-) Length   459 a.a.
NCBI ID   WP_024394629.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462662..1474041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS07080 (A7J09_07220) coaA 1462997..1463917 (+) 921 WP_002940857.1 type I pantothenate kinase -
  A7J09_RS07085 (A7J09_07225) rpsT 1463976..1464224 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  A7J09_RS07090 (A7J09_07230) - 1464486..1465715 (-) 1230 WP_029178484.1 transglutaminase domain-containing protein -
  A7J09_RS07095 (A7J09_07235) - 1466055..1467257 (+) 1203 WP_148124345.1 IS110 family transposase -
  A7J09_RS07100 (A7J09_07245) ciaH 1467662..1469041 (-) 1380 WP_024394629.1 sensor histidine kinase Regulator
  A7J09_RS07105 (A7J09_07250) ciaR 1469034..1469705 (-) 672 WP_024385291.1 response regulator transcription factor Regulator
  A7J09_RS07110 (A7J09_07255) - 1469899..1470234 (-) 336 Protein_1372 hypothetical protein -
  A7J09_RS07115 (A7J09_07260) phoU 1470400..1471056 (-) 657 WP_024394630.1 phosphate signaling complex protein PhoU -
  A7J09_RS07120 (A7J09_07265) pstB 1471085..1471843 (-) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  A7J09_RS07125 (A7J09_07270) pstB 1471855..1472658 (-) 804 WP_002940866.1 phosphate ABC transporter ATP-binding protein PstB -
  A7J09_RS07130 (A7J09_07275) pstA 1472683..1473570 (-) 888 WP_029178759.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 51923.64 Da        Isoelectric Point: 6.8882

>NTDB_id=257971 A7J09_RS07100 WP_024394629.1 1467662..1469041(-) (ciaH) [Streptococcus suis strain ISU2812]
MPKRIRKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQD
SPTGEETTSSSSDSMPVPKNQKNTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYEATVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPETTILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDEDGTIQIAANIKDKLVCFTVIDNGLGISDT
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKGTIFEVRLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=257971 A7J09_RS07100 WP_024394629.1 1467662..1469041(-) (ciaH) [Streptococcus suis strain ISU2812]
ATGCCTAAGCGAATCAGAAAATTAGTGTATACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATCATTTTTCAATTAATGCGTTCAACTATGTACCAAAATTCAGATAACACCTTGAAACGCA
TTAAGAAAGAACCAGCGCTGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAATTCTGTATTTATCCTTCAAGAT
AGTCCAACTGGTGAAGAAACTACGAGCTCTAGTTCAGATAGCATGCCTGTTCCTAAAAATCAAAAAAATACTAGAGCTGG
AGATCAGCTGAGATTAGGTGCCAATACTCATGTTTTACTCTATAGTAAAAGTGGAGAGATGATTAATCCAGATACTTTTA
CTGGTTTGGCCGACCTATCATTAGACAAGGAAAAATTGGGTGAAATTAAGGAAACTACGGTTGAATCAAGTTTTGGTATG
TCTGAAGATTATCGCTATATAACGATTGGGCTGGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTGGTGAATGTCAGCCAAATTAAATCTTCCATTGAGAGCTATGAAGCGACAGTTGCTATTGTTATGGTATCAG
CTTGGTTGATTTCTATACTAGCAAGTATTTACCTATCGAATCTTAGCATGCGTCCAATCCTAATTAGTTATCAAAAACAA
AAAGACTTCGTTGAAAATGCTAGTCATGAGTTACGCACACCGTTGGCAGTTCTTCAAAATCGCCTGGAAAGTCTATTTCG
TCATCCCGAGACAACTATTTTGGAAAGTAGTGAAAGCATCGGATCTAGTTTAGAAGAAGTTCGAAATATGCGACTATTGA
CAACAAATTTACTTAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACTCTAACAGTTAATAATTTGATTCATCAGCCAAT
TCGAACAGACAAGGTTTTGATTAAACAGTTGCTCACCATTTTGTTTGACAACGCTATGAAGTATACCGATGAAGATGGGA
CAATTCAAATAGCAGCTAATATCAAGGACAAACTAGTTTGTTTTACAGTTATTGACAATGGTTTGGGAATCAGCGATACC
GATAAAAAGAAAATCTTTGATCGCTTTTACCGAGTTGACAAGGCTAGAACACGTCAAAAAGGTGGATTTGGTTTAGGTTT
ATCTTTAGCTCAACAAATTATTAAGAATTTAGATGGTGAGATTTCTGTGAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTACGTTTACCCAAATAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(240-306)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(350-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

49.451

99.129

0.49
  ciaH Streptococcus pneumoniae Rx1

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae D39

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae R6

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae TIGR4

49.127

99.782

0.49