Detailed information NTG0257686

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CWR54_RS03190
• Genome accession: NZ_CP025047
• Coordinates: 666473..667180 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain W0003a
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 661473..672180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWR54_RS03160 (CWR54_03160)	cdd1	662268..662513 (+)	246	WP_009888450.1	protein Cdd1	-
CWR54_RS03165 (CWR54_03165)	-	662731..663000 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
CWR54_RS03175 (CWR54_03175)	-	663878..664615 (-)	738	WP_003439186.1	ABC transporter permease	-
CWR54_RS03180 (CWR54_03180)	-	664627..665388 (-)	762	WP_009895698.1	ABC transporter permease	-
CWR54_RS03185 (CWR54_03185)	-	665388..666311 (-)	924	WP_025985748.1	ABC transporter ATP-binding protein	-
CWR54_RS03190 (CWR54_03190)	scnR	666473..667180 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
CWR54_RS03195 (CWR54_03195)	-	667225..668631 (+)	1407	WP_021373293.1	sensor histidine kinase	-
CWR54_RS03200 (CWR54_03200)	-	670392..670781 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
CWR54_RS03205 (CWR54_03205)	-	671651..672121 (+)	471	WP_003439176.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=257686 CWR54_RS03190 WP_009888460.1 666473..667180(+) (scnR) [Clostridioides difficile strain W0003a]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=257686 CWR54_RS03190 WP_009888460.1 666473..667180(+) (scnR) [Clostridioides difficile strain W0003a]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379