Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CFC57_RS04335 Genome accession   NZ_CP029751
Coordinates   834501..836486 (+) Length   661 a.a.
NCBI ID   WP_000229260.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Smith     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 829501..841486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFC57_RS04305 (CFC57_04480) - 830547..830645 (+) 99 WP_001791369.1 hypothetical protein -
  CFC57_RS04310 (CFC57_04485) prfB 830815..831925 (+) 1111 WP_098817736.1 peptide chain release factor 2 -
  CFC57_RS04315 (CFC57_04490) - 832079..832186 (+) 108 WP_072358033.1 hypothetical protein -
  CFC57_RS04320 (CFC57_04495) - 832334..833173 (+) 840 WP_000749388.1 CHAP domain-containing protein -
  CFC57_RS04325 (CFC57_04500) - 833347..833997 (+) 651 WP_000538141.1 YfbR-like 5'-deoxynucleotidase -
  CFC57_RS04330 (CFC57_04505) - 833994..834230 (+) 237 WP_000638419.1 CsbA family protein -
  CFC57_RS04335 (CFC57_04510) uvrB 834501..836486 (+) 1986 WP_000229260.1 excinuclease ABC subunit UvrB Machinery gene
  CFC57_RS04340 (CFC57_04515) uvrA 836494..839340 (+) 2847 WP_000662689.1 excinuclease ABC subunit UvrA Machinery gene
  CFC57_RS04345 (CFC57_04525) hprK 840327..841259 (+) 933 WP_000958224.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76690.42 Da        Isoelectric Point: 5.0984

>NTDB_id=257638 CFC57_RS04335 WP_000229260.1 834501..836486(+) (uvrB) [Staphylococcus aureus strain Smith]
MVEHYPFKIHSDFEPQGDQPRAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFK
EFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLV
VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKER
EHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPL
GSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGP
YEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTD
SMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAK
DLDFEKATELRDMLFELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=257638 CFC57_RS04335 WP_000229260.1 834501..836486(+) (uvrB) [Staphylococcus aureus strain Smith]
ATGGTTGAACATTATCCTTTTAAAATACATTCTGATTTTGAGCCTCAAGGTGACCAACCGCGAGCAATTAAGGAAATCGT
GGAAGGTATTAAAGCGGGGAAAAGACATCAAACTTTATTAGGTGCAACTGGCACAGGGAAAACATTTACGATGAGTAATG
TTATTAAAGAAGTTGGGAAACCAACGTTAATTATCGCGCATAACAAAACATTAGCAGGACAATTATATAGTGAGTTTAAA
GAATTTTTTCCTGAAAACAGGGTGGAATACTTTGTAAGTTACTATGATTATTATCAACCTGAGGCATACGTACCGTCTAC
TGACACTTTTATTGAAAAAGATGCCTCAATCAATGATGAAATTGATCAACTACGACATTCTGCTACAAGTGCATTATTTG
AACGCGATGATGTAATTATTATTGCTAGTGTAAGTTGTATATATGGTTTAGGTAATCCTGAAGAATATAAAGATTTAGTA
GTAAGTGTTCGAGTTGGTATGGAAATGGATAGAAGCGAATTACTTAGAAAACTTGTAGATGTGCAATATACACGTAATGA
CATCGATTTCCAACGAGGAACGTTTCGAGTGCGTGGTGATGTAGTTGAAATATTCCCAGCCTCTAAAGAAGAACTTTGTA
TAAGGGTTGAGTTTTTCGGCGATGAGATTGACCGTATTCGAGAAGTTAACTACCTAACAGGTGAAGTGTTGAAAGAAAGA
GAACATTTTGCGATATTCCCAGCTTCTCACTTCGTAACACGTGAAGAAAAGTTGAAAGTTGCGATTGAACGTATTGAAAA
AGAATTGGAAGAACGATTGAAAGAATTACGAGATGAGAATAAATTACTAGAAGCGCAAAGGTTAGAACAGCGTACCAACT
ATGATTTAGAAATGATGCGAGAAATGGGGTTCTGTTCAGGAATTGAAAACTATTCAGTACATTTAACGTTGCGACCACTA
GGTTCGACACCATATACTTTATTGGATTACTTTGGCGATGATTGGTTAATAATGATTGATGAATCACATGTGACGTTACC
GCAAGTTCGTGGCATGTATAACGGAGACAGAGCACGAAAACAAGTTTTAGTTGATCATGGATTTAGATTACCAAGTGCGT
TAGATAACCGCCCACTTAAATTTGAAGAATTTGAAGAAAAGACGAAACAACTTGTGTATGTATCTGCAACGCCTGGTCCA
TACGAAATTGAACATACGGATAAGATGGTTGAACAAATTATTCGTCCTACTGGTTTACTGGACCCTAAGATTGAGGTTAG
ACCTACTGAAAATCAAATTGACGATTTATTAAGTGAAATTCAAACAAGGGTTGAGCGTAATGAAAGAGTACTTGTTACAA
CACTCACTAAAAAGATGAGTGAAGATTTAACCACATATATGAAAGAAGCAGGCATTAAAGTTAACTATCTACATTCTGAA
ATTAAAACATTAGAACGAATCGAAATAATTAGAGACTTACGAATGGGTACATATGATGTTATCGTAGGTATTAATTTATT
AAGAGAGGGTATTGATATACCAGAAGTTTCTCTAGTTGTCATATTAGATGCAGATAAAGAAGGATTTTTACGTTCTAACC
GCTCATTAATTCAAACAATAGGTAGAGCTGCGCGTAACGATAAAGGTGAAGTCATTATGTATGCCGATAAAATGACTGAT
TCGATGAAGTATGCAATTGATGAGACACAACGTCGTCGAGAAATACAGATGAAACATAATGAAAAACATGGTATTACACC
TAAAACAATTAATAAAAAAATACATGATTTAATTAGTGCTACTGTTGAAAATGACGAAAATAATGACAAAGCACAAACTG
TGATACCTAAGAAGATGACGAAAAAAGAACGTCAAAAGACAATCGACAATATAGAAAAAGAAATGAAACAAGCAGCGAAA
GATTTAGATTTCGAGAAAGCTACAGAATTAAGAGATATGTTATTTGAATTAAAAGCAGAAGGGTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(553-594)

Helicase conserved C-terminal domain (Helicase_C)

(434-546)

Type III restriction enzyme, res subunit (ResIII)

(14-140)

UvrB interaction domain (UvrB_inter)

(161-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

67.534

98.79

0.667
  uvrB Streptococcus pneumoniae D39

67.534

98.79

0.667
  uvrB Streptococcus pneumoniae TIGR4

67.534

98.79

0.667