Detailed information NTG0257619

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DLM82_RS10900
• Genome accession: NZ_CP029749
• Coordinates: 2072029..2073138 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain PLGBS13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2067029..2078138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLM82_RS10875 (DLM82_10860)	-	2067401..2068240 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
DLM82_RS10880 (DLM82_10865)	pgsA	2068240..2068782 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
DLM82_RS10885 (DLM82_10870)	yfmH	2068905..2070188 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
DLM82_RS10890 (DLM82_10875)	yfmF	2070190..2071434 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
DLM82_RS10895 (DLM82_10880)	yaaA	2071673..2072026 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
DLM82_RS10900 (DLM82_10885)	recF	2072029..2073138 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
DLM82_RS10905 (DLM82_10890)	-	2073150..2074016 (-)	867	WP_000398683.1	GRP family sugar transporter	-
DLM82_RS10910 (DLM82_10895)	-	2074072..2074734 (-)	663	WP_001868421.1	helix-turn-helix transcriptional regulator	-
DLM82_RS10915 (DLM82_10900)	guaB	2074809..2076290 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
DLM82_RS10920 (DLM82_10905)	-	2076447..2076932 (-)	486	WP_001034427.1	arginine repressor	-
DLM82_RS10925 (DLM82_10910)	-	2076942..2077622 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=257619 DLM82_RS10900 WP_000264870.1 2072029..2073138(+) (recF) [Streptococcus agalactiae strain PLGBS13]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=257619 DLM82_RS10900 WP_000264870.1 2072029..2073138(+) (recF) [Streptococcus agalactiae strain PLGBS13]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447