Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CWI26_RS08325 Genome accession   NZ_CP025043
Coordinates   1690287..1691090 (-) Length   267 a.a.
NCBI ID   WP_100881579.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685287..1696090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS08305 (CWI26_08305) recR 1685601..1686197 (-) 597 WP_002935848.1 recombination mediator RecR -
  CWI26_RS08310 (CWI26_08310) pbp2b 1686206..1688278 (-) 2073 WP_024376693.1 penicillin-binding protein PBP2B -
  CWI26_RS08315 (CWI26_08315) vga(F) 1688370..1689755 (-) 1386 WP_233486241.1 ABC-F type ribosomal protection protein Vga(F) -
  CWI26_RS08325 (CWI26_08325) vicX 1690287..1691090 (-) 804 WP_100881579.1 MBL fold metallo-hydrolase Regulator
  CWI26_RS08330 (CWI26_08330) micB 1691097..1692446 (-) 1350 WP_024379730.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CWI26_RS08335 (CWI26_08335) micA 1692439..1693143 (-) 705 WP_004298854.1 response regulator YycF Regulator
  CWI26_RS08340 (CWI26_08340) - 1693337..1694098 (+) 762 WP_004298852.1 amino acid ABC transporter ATP-binding protein -
  CWI26_RS08345 (CWI26_08345) - 1694109..1694948 (+) 840 WP_100881580.1 transporter substrate-binding domain-containing protein -
  CWI26_RS08350 (CWI26_08350) - 1694963..1695661 (+) 699 WP_029185563.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29543.64 Da        Isoelectric Point: 5.9824

>NTDB_id=257616 CWI26_RS08325 WP_100881579.1 1690287..1691090(-) (vicX) [Streptococcus suis strain AH681]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMENKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
ANADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVSQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=257616 CWI26_RS08325 WP_100881579.1 1690287..1691090(-) (vicX) [Streptococcus suis strain AH681]
ATGATCGGAAAAGGATTTAACTACAGTATTTTAGCATCGGGATCCAGTGGAAACTGTTTCTATTTGGAAACGGATAAGAA
GAAGATCTTGGTAGATGCTGGTTTATCAGGAAAAAAGATTACCAGCCTTTTGGCAGAAATTGACCGCAAGCCAGAAGATA
TTGATGCTATCCTGGTAACGCATGAACATAGTGACCACATCCATGGTATCGGTGTTTTAGCTCGTAAATATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAACAAGTTGGGTAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCCATGAAGACTTTTGGTGACCTAGATATTGAGTCGTTTGGTGTTAGCCATGATGCGGCTTGTCCTCAATTTT
ATCGCTTTATGAAGGATGATAAGTCCTTTGTCATGTTAACGGATACTGGCTATGTCAGCGATCGAATGGCTGGGATTGTG
GCGAATGCAGATGCCTATTTGATTGAGTCTAATCATGATGTTGAAATCTTGCGTGCGGGTTCTTATTCTTGGAACCTCAA
GCAACGGATTTTGTCTGATAAGGGGCACCTTTGTAACGAGGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGAA
CTAAAAAGATTTACCTTGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAGTCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAGGTCTATGATACCTCGCCAGATACAGCGACACCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.03

100

0.76

Multiple sequence alignment