Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CWR53_RS06855 Genome accession   NZ_CP025035
Coordinates   1513320..1515536 (+) Length   738 a.a.
NCBI ID   WP_100851111.1    Uniprot ID   A0AAD0B0J5
Organism   Pseudomonas sp. SGAir0191     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508320..1520536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWR53_RS06835 (CWR53_06830) - 1510184..1510807 (+) 624 WP_058605759.1 glutathione S-transferase -
  CWR53_RS06840 (CWR53_06835) - 1510953..1511885 (+) 933 WP_100851109.1 ABC transporter ATP-binding protein -
  CWR53_RS06845 (CWR53_06840) - 1511882..1512661 (+) 780 WP_100851110.1 ABC transporter permease -
  CWR53_RS06850 (CWR53_06845) - 1512545..1513177 (-) 633 WP_138031813.1 DUF2062 domain-containing protein -
  CWR53_RS06855 (CWR53_06850) comA 1513320..1515536 (+) 2217 WP_100851111.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CWR53_RS06860 (CWR53_06855) exbB 1515598..1516233 (+) 636 WP_027919457.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CWR53_RS06865 (CWR53_06860) - 1516230..1516664 (+) 435 WP_100851112.1 biopolymer transporter ExbD -
  CWR53_RS06870 (CWR53_06865) lpxK 1516664..1517665 (+) 1002 WP_058605754.1 tetraacyldisaccharide 4'-kinase -
  CWR53_RS06875 (CWR53_06870) - 1517709..1517894 (+) 186 WP_003247142.1 Trm112 family protein -
  CWR53_RS06880 (CWR53_06875) kdsB 1517891..1518652 (+) 762 WP_058605753.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CWR53_RS06885 (CWR53_06880) - 1518652..1519116 (+) 465 WP_058605752.1 low molecular weight protein-tyrosine-phosphatase -
  CWR53_RS06890 (CWR53_06885) murB 1519113..1520132 (+) 1020 WP_100851113.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79732.41 Da        Isoelectric Point: 10.1824

>NTDB_id=257537 CWR53_RS06855 WP_100851111.1 1513320..1515536(+) (comA) [Pseudomonas sp. SGAir0191]
MRTGMLALALGLLSLCLVPQLPSVGWLLMLAAGAVVSLFTRGWLLGLFLLGFCWACWSAKQAVEDRLAPGLDGRTLWLEG
RVAGLPARTAQGVRFELEGAYSRRVDLPQRLQLSWFDGPPLRAGEQWRLAVTLQRPTGLLNPHGPDREAQLLARRVGASG
AVKAGQLLTPAAVGWRDGLRERLLAVEAHGRQAALVALVLGDGTGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPTRLPWLPWACVLAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFHPLLLALVAVLLFEPL
AALLPGFWLSFGAVATLIYSFSARLGAWRPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGDAGEALLWLAGGLLDVLFRALALVAQQRPAWVPPAPPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLLALW
VPREPVSHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLGKLGVDSLDVLLVSHAHADHAGGAG
AIQRGLPVRRAIGGEPLEEVQLQPCVSGESWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSTEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALRLVLGAQG
EVEGMRSQRRFWRDARGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=257537 CWR53_RS06855 WP_100851111.1 1513320..1515536(+) (comA) [Pseudomonas sp. SGAir0191]
ATGCGCACAGGGATGTTGGCGCTCGCCCTTGGTCTGCTCAGTCTTTGCCTGGTACCTCAATTGCCATCGGTCGGATGGCT
GCTGATGCTTGCAGCGGGCGCCGTCGTCAGTCTGTTCACCCGGGGTTGGTTATTGGGTTTGTTCCTGCTGGGCTTCTGCT
GGGCCTGCTGGTCTGCCAAGCAGGCCGTGGAGGATCGTCTGGCGCCAGGGCTCGATGGTCGCACCTTATGGCTGGAAGGG
CGGGTGGCCGGTCTGCCGGCGCGCACTGCACAAGGCGTTCGCTTCGAGCTTGAGGGCGCGTATTCCCGGCGTGTCGATTT
GCCGCAACGACTGCAATTGAGCTGGTTTGACGGGCCGCCACTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTCACCCTGC
AGCGGCCGACCGGCCTTCTGAACCCCCACGGGCCCGACCGGGAGGCGCAGCTGCTGGCACGTCGGGTCGGCGCCAGCGGA
GCGGTGAAAGCCGGGCAGTTACTGACGCCCGCGGCAGTCGGGTGGCGCGATGGCCTGCGCGAGCGTCTGCTGGCGGTCGA
GGCCCATGGTCGGCAAGCCGCGTTGGTGGCGTTGGTGCTGGGCGATGGGACCGGCCTGGCGCGCGAAGACTGGCAGGCGC
TTCAGGCCACCGGCACCGTGCACCTGCTGGTGATTTCAGGCCAGCACATTGGCCTGGTGGCGGGTCTGCTCTATGCCGTG
GTCGCGTGGTTAGCCCGCTGGGGGCTGTGGCCCACCCGGCTGCCGTGGCTGCCTTGGGCCTGTGTGCTAGCCATGAGTGC
GGCGCTGGCTTACGGCTGGCTGGCCGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCACCTTGGCGCGTTCCACCCCTTGTTACTTGCCTTGGTTGCCGTTTTGCTGTTCGAGCCGTTG
GCGGCGCTGCTTCCAGGCTTCTGGCTGTCATTCGGCGCCGTGGCCACGCTCATCTACAGCTTCAGTGCTCGGCTAGGGGC
CTGGCGACCCTGGCAGGCATGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGTTGCTCCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGTTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCCTGGCGGTATTGCCGCTGGCGCTG
TTGGGCACTTTGTTGCTGCCGCTGGGCGACGCAGGTGAGGCATTGCTGTGGCTGGCAGGCGGCCTGCTGGATGTCTTGTT
TCGCGCGCTAGCACTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCGGCACCGCCGTTGTGGGCCTGGCTGCTGGTAT
GCCTGGGTGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCCCTGCGTGGGTTGGGCGCGGTGATGCTTTTGGCGCTCTGG
GTGCCTAGGGAGCCGGTCTCGCACGGCCAGGTCGAGGTCTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
CACCCGGCAGCACAGTCTGCTCTATGACGCCGGGCCGGCCAGGGGCGAAAGCGATCTGGGTGAGCGGGTCGTGTTGCCCA
CCTTGGGCAAGTTGGGGGTCGACAGCCTGGATGTGCTGCTGGTCAGTCACGCCCATGCCGATCACGCCGGCGGTGCAGGT
GCGATCCAGCGCGGGCTGCCAGTCAGACGGGCGATTGGCGGTGAGCCGCTGGAAGAGGTTCAGTTACAGCCTTGCGTCAG
TGGCGAGTCCTGGGAGTGGGACGGGGTTCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAATGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGGGAGCGGTTGCTGCTGGCCGGTGACATGGAGGCGGGAGCCGAACGTGCGTGGCTG
GCTGCCATGGATTCACCACGCATCGACTGGCTGCAGTCGCCGCACCACGGTAGCCGCAGTTCGTCGACCGAAGCCTTCAT
CCGCGCTGCGGCCCCGCGTGGGGTACTGATTTCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGGCATGGCATGACCCTGCACGACACGGCAGTGGAGGGGGCGTTGCGTCTGGTGCTCGGTGCGCAAGGC
GAGGTCGAGGGTATGCGCAGCCAGCGCCGCTTCTGGCGCGACGCCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(16-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.136

97.425

0.566
  comA Ralstonia pseudosolanacearum GMI1000

35.355

100

0.371

Multiple sequence alignment