Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CWR53_RS06860 Genome accession   NZ_CP025035
Coordinates   1515598..1516233 (+) Length   211 a.a.
NCBI ID   WP_027919457.1    Uniprot ID   A0A1X7FVF4
Organism   Pseudomonas sp. SGAir0191     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510598..1521233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWR53_RS06840 (CWR53_06835) - 1510953..1511885 (+) 933 WP_100851109.1 ABC transporter ATP-binding protein -
  CWR53_RS06845 (CWR53_06840) - 1511882..1512661 (+) 780 WP_100851110.1 ABC transporter permease -
  CWR53_RS06850 (CWR53_06845) - 1512545..1513177 (-) 633 WP_138031813.1 DUF2062 domain-containing protein -
  CWR53_RS06855 (CWR53_06850) comA 1513320..1515536 (+) 2217 WP_100851111.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CWR53_RS06860 (CWR53_06855) exbB 1515598..1516233 (+) 636 WP_027919457.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CWR53_RS06865 (CWR53_06860) - 1516230..1516664 (+) 435 WP_100851112.1 biopolymer transporter ExbD -
  CWR53_RS06870 (CWR53_06865) lpxK 1516664..1517665 (+) 1002 WP_058605754.1 tetraacyldisaccharide 4'-kinase -
  CWR53_RS06875 (CWR53_06870) - 1517709..1517894 (+) 186 WP_003247142.1 Trm112 family protein -
  CWR53_RS06880 (CWR53_06875) kdsB 1517891..1518652 (+) 762 WP_058605753.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CWR53_RS06885 (CWR53_06880) - 1518652..1519116 (+) 465 WP_058605752.1 low molecular weight protein-tyrosine-phosphatase -
  CWR53_RS06890 (CWR53_06885) murB 1519113..1520132 (+) 1020 WP_100851113.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=257538 CWR53_RS06860 WP_027919457.1 1515598..1516233(+) (exbB) [Pseudomonas sp. SGAir0191]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=257538 CWR53_RS06860 WP_027919457.1 1515598..1516233(+) (exbB) [Pseudomonas sp. SGAir0191]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCCTGCGCGCCAGTCGGGTCAGCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCTTGGGCGAAATCCTCGCGGCGGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCACGCGTTATCCACGAGCTCGAGCGCTACAT
CAGCACGCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGACCGCCAACGCCGCGGTGCTGGCGGGTGGCATTTCTAAGGCGCTGGTAACCACGGCG
GCCGGGCTGATGGTGGGTATCCCGGCGGTGTTCTTCCACCGCTTTCTGCTGCGCCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAGGCAATCAAGCTGGTGGAAGTGATTCAGGGTGACCGCGAGGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7FVF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment