Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   CWQ22_RS05000 Genome accession   NZ_CP025027
Coordinates   937524..938834 (-) Length   436 a.a.
NCBI ID   WP_100831573.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SGEHI2015-107     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 932524..943834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWQ22_RS04980 (CWQ22_04980) - 934004..934777 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  CWQ22_RS04985 (CWQ22_04985) - 934767..935453 (-) 687 WP_000280308.1 SatD family protein -
  CWQ22_RS04990 (CWQ22_04990) ffh 935520..937085 (-) 1566 WP_000863589.1 signal recognition particle protein -
  CWQ22_RS04995 (CWQ22_04995) - 937103..937435 (-) 333 WP_000402075.1 putative DNA-binding protein -
  CWQ22_RS05000 (CWQ22_05000) ciaH 937524..938834 (-) 1311 WP_100831573.1 HAMP domain-containing sensor histidine kinase Regulator
  CWQ22_RS05005 (CWQ22_05005) ciaR 938818..939498 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  CWQ22_RS05010 (CWQ22_05010) - 939660..942209 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  CWQ22_RS05015 (CWQ22_05015) phoU 942355..943008 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  CWQ22_RS05020 (CWQ22_05020) pstB 943042..943800 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49579.03 Da        Isoelectric Point: 9.5902

>NTDB_id=257340 CWQ22_RS05000 WP_100831573.1 937524..938834(-) (ciaH) [Streptococcus agalactiae strain SGEHI2015-107]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVTY
MTAIVNIDQLVNAKERYEKIIIFVMTTFWIISIGASIYLAKWTQKPIIENYERQKAFVENASHELRTPLAVLQNRLETLF
RKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLIAQENGKNFTGHNMIQDS
FKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGLG
LSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=257340 CWQ22_RS05000 WP_100831573.1 937524..938834(-) (ciaH) [Streptococcus agalactiae strain SGEHI2015-107]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGTCATTAA
CTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTTTAA
CCAACATCTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACTTAC
ATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGACTAC
TTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGACACAAAAACCGATTATAGAAAACTACGAAAGAC
AGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTATTC
AGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTATTTT
AACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTTTTG
ATAGTATCTTTGAGAATTATGATCTAATCGCCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATCCAAGATAGT
TTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGATGG
TAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAGAGG
AGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGGTTTGGCCTCGGC
CTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTATTTT
TAAGATAAAACTACCAAAAGTAAAAGGTTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(215-280)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.373

98.394

0.594
  ciaH Streptococcus pneumoniae Rx1

52

97.477

0.507
  ciaH Streptococcus pneumoniae D39

52

97.477

0.507
  ciaH Streptococcus pneumoniae R6

52

97.477

0.507
  ciaH Streptococcus pneumoniae TIGR4

52

97.477

0.507

Multiple sequence alignment