Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CWD84_RS22800 Genome accession   NZ_CP025001
Coordinates   532677..533366 (+) Length   229 a.a.
NCBI ID   WP_201025265.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527677..538366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS02730 (CWD84_02730) degS 527961..529124 (+) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  CWD84_RS02735 (CWD84_02735) degU 529201..529890 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CWD84_RS02740 (CWD84_02740) - 529988..530836 (+) 849 WP_060964144.1 DegV family protein -
  CWD84_RS02745 (CWD84_02745) comFA 530944..532329 (+) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  CWD84_RS02750 (CWD84_02750) - 532387..532671 (+) 285 WP_016937770.1 late competence development ComFB family protein -
  CWD84_RS22800 (CWD84_02755) comFC 532677..533366 (+) 690 WP_201025265.1 ComF family protein Machinery gene
  CWD84_RS02760 (CWD84_02760) - 533440..533859 (+) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  CWD84_RS02765 (CWD84_02765) flgM 533929..534195 (+) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  CWD84_RS02770 (CWD84_02770) - 534210..534692 (+) 483 WP_060964147.1 flagellar protein FlgN -
  CWD84_RS02775 (CWD84_02775) flgK 534708..536225 (+) 1518 WP_060964148.1 flagellar hook-associated protein FlgK -
  CWD84_RS02780 (CWD84_02780) flgL 536238..537155 (+) 918 WP_060964149.1 flagellar hook-associated protein FlgL -
  CWD84_RS02785 (CWD84_02785) - 537246..537815 (+) 570 WP_060964150.1 DUF6470 family protein -
  CWD84_RS02790 (CWD84_02790) fliW 537845..538276 (+) 432 WP_016937778.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25369.00 Da        Isoelectric Point: 8.0155

>NTDB_id=257128 CWD84_RS22800 WP_201025265.1 532677..533366(+) (comFC) [Bacillus siamensis strain SCSIO 05746]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCCLCGRSQESNEKCADCISRESKTEKRFLLRQNRSVY
LYNDAMKDALTRFKFRGDAKIIQAFERDFAAGYKAAYPSNTHTLVPIPLSGERLAERGFNQSELLASLLGMPVIYPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=257128 CWD84_RS22800 WP_201025265.1 532677..533366(+) (comFC) [Bacillus siamensis strain SCSIO 05746]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCACTGACCTGGAGATCTCTATTTTCCCTTGCACCGGAACAAGA
GGTATGCAGCGCATGCAGCAATCAATTCGAAAAAATTGAAGGTCCCGTATGCTGTTTGTGCGGAAGGTCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGCATATCGCGGGAATCAAAAACGGAAAAGCGCTTTTTACTGCGGCAGAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGATGCATTGACCCGGTTTAAATTTCGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGATTTTGCTGCCGGCTATAAAGCGGCGTACCCGTCAAATACACATACCCTCGTCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTACCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAAAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCTGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGAAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-60)

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment