Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CWD84_RS02735 Genome accession   NZ_CP025001
Coordinates   529201..529890 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus siamensis strain SCSIO 05746     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 524201..534890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS02715 (CWD84_02715) - 524673..525749 (+) 1077 WP_060964142.1 glycosyltransferase family 4 protein -
  CWD84_RS02720 (CWD84_02720) - 525848..527086 (-) 1239 WP_060964143.1 LCP family protein -
  CWD84_RS02725 (CWD84_02725) - 527091..527738 (-) 648 WP_007614107.1 YigZ family protein -
  CWD84_RS02730 (CWD84_02730) degS 527961..529124 (+) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  CWD84_RS02735 (CWD84_02735) degU 529201..529890 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CWD84_RS02740 (CWD84_02740) - 529988..530836 (+) 849 WP_060964144.1 DegV family protein -
  CWD84_RS02745 (CWD84_02745) comFA 530944..532329 (+) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  CWD84_RS02750 (CWD84_02750) - 532387..532671 (+) 285 WP_016937770.1 late competence development ComFB family protein -
  CWD84_RS22800 (CWD84_02755) comFC 532677..533366 (+) 690 WP_201025265.1 ComF family protein Machinery gene
  CWD84_RS02760 (CWD84_02760) - 533440..533859 (+) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  CWD84_RS02765 (CWD84_02765) flgM 533929..534195 (+) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  CWD84_RS02770 (CWD84_02770) - 534210..534692 (+) 483 WP_060964147.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=257062 CWD84_RS02735 WP_003219701.1 529201..529890(+) (degU) [Bacillus siamensis strain SCSIO 05746]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=257062 CWD84_RS02735 WP_003219701.1 529201..529890(+) (degU) [Bacillus siamensis strain SCSIO 05746]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGCGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATTGAGGCAGTGAAAGTAGTAGCCGAAGGCGGTTCGTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGACGTCTTGCGACAAGCGGAGTTTCCGCTCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment