Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CWD84_RS02745 Genome accession   NZ_CP025001
Coordinates   530944..532329 (+) Length   461 a.a.
NCBI ID   WP_060964145.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525944..537329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS02725 (CWD84_02725) - 527091..527738 (-) 648 WP_007614107.1 YigZ family protein -
  CWD84_RS02730 (CWD84_02730) degS 527961..529124 (+) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  CWD84_RS02735 (CWD84_02735) degU 529201..529890 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CWD84_RS02740 (CWD84_02740) - 529988..530836 (+) 849 WP_060964144.1 DegV family protein -
  CWD84_RS02745 (CWD84_02745) comFA 530944..532329 (+) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  CWD84_RS02750 (CWD84_02750) - 532387..532671 (+) 285 WP_016937770.1 late competence development ComFB family protein -
  CWD84_RS22800 (CWD84_02755) comFC 532677..533366 (+) 690 WP_201025265.1 ComF family protein Machinery gene
  CWD84_RS02760 (CWD84_02760) - 533440..533859 (+) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  CWD84_RS02765 (CWD84_02765) flgM 533929..534195 (+) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  CWD84_RS02770 (CWD84_02770) - 534210..534692 (+) 483 WP_060964147.1 flagellar protein FlgN -
  CWD84_RS02775 (CWD84_02775) flgK 534708..536225 (+) 1518 WP_060964148.1 flagellar hook-associated protein FlgK -
  CWD84_RS02780 (CWD84_02780) flgL 536238..537155 (+) 918 WP_060964149.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52385.60 Da        Isoelectric Point: 10.0159

>NTDB_id=257063 CWD84_RS02745 WP_060964145.1 530944..532329(+) (comFA) [Bacillus siamensis strain SCSIO 05746]
MSEDASEFSEVRDFFYGRHLLRSEIPFSDQRINSFIEKEHITAEPSVIRRKNRYACRRCGQSDQACFAAFWAPSAKRHIT
YCRACVVMGRADELTSLYSWNQTSESSWEPVKLAWEGTLTDGQKQAAGALIKAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGSSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKNNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSVTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVSKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=257063 CWD84_RS02745 WP_060964145.1 530944..532329(+) (comFA) [Bacillus siamensis strain SCSIO 05746]
ATGTCCGAAGATGCTTCAGAATTTTCAGAGGTGAGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAATTCTTTTATAGAAAAAGAACATATAACGGCCGAGCCGTCTGTTATCCGCAGGAAAAACCGTT
ACGCCTGCCGCCGATGCGGCCAGTCTGACCAAGCCTGCTTTGCCGCATTCTGGGCGCCTTCTGCCAAAAGACATATTACC
TATTGCCGTGCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATATTCTTGGAATCAAACCTCAGAAAGCAG
CTGGGAGCCTGTAAAGCTTGCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGGCGCGCTTATAAAAGCGA
TAAAAGAGAAACAAGAACTGTTAGTGTGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTCGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCAGCTCTGTACGGCAGCAGTGAAGACAAAGGCAGTTTAACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGATATCGGGACATTTTTGATGTCATGATAATAGATGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAACAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTATGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCACTCAGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATATCCGCGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTATCCAAAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCGCTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618
  comFA Latilactobacillus sakei subsp. sakei 23K

37.955

95.445

0.362

Multiple sequence alignment