Detailed information NTG0257119

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CWD84_RS20025
• Genome accession: NZ_CP025001
• Coordinates: 3881884..3883032 (-)
• Length: 382 a.a.
• NCBI ID: WP_045926250.1
• Uniprot ID: -
• Organism: Bacillus siamensis strain SCSIO 05746
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3876884..3888032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWD84_RS19995 (CWD84_19990)	-	3877022..3877780 (-)	759	WP_047476235.1	ABC transporter ATP-binding protein	-
CWD84_RS20000 (CWD84_19995)	-	3877774..3878721 (-)	948	WP_045926247.1	iron chelate uptake ABC transporter family permease subunit	-
CWD84_RS20005 (CWD84_20000)	ceuB	3878711..3879664 (-)	954	WP_101605585.1	ABC transporter permease	Machinery gene
CWD84_RS20010 (CWD84_20005)	-	3880080..3881444 (+)	1365	WP_060963607.1	aspartate kinase	-
CWD84_RS20015 (CWD84_20010)	-	3881540..3881638 (+)	99	WP_016937260.1	YjcZ family sporulation protein	-
CWD84_RS20020 (CWD84_20015)	phrC	3881781..3881900 (-)	120	WP_016937261.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CWD84_RS20025 (CWD84_20020)	rapC	3881884..3883032 (-)	1149	WP_045926250.1	tetratricopeptide repeat protein	Regulator
CWD84_RS20030 (CWD84_20025)	-	3883186..3884619 (-)	1434	WP_162492439.1	sensor histidine kinase	-
CWD84_RS20035 (CWD84_20030)	-	3884606..3885289 (-)	684	WP_060963609.1	response regulator transcription factor	-
CWD84_RS20040 (CWD84_20035)	-	3885506..3886948 (+)	1443	WP_060963610.1	ABC transporter permease	-
CWD84_RS20045 (CWD84_20040)	-	3886963..3887646 (+)	684	WP_060963611.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45561.76 Da
• Isoelectric Point: 5.0674

>NTDB_id=257119 CWD84_RS20025 WP_045926250.1 3881884..3883032(-) (rapC) [Bacillus siamensis strain SCSIO 05746]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRTD
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHRRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLENKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=257119 CWD84_RS20025 WP_045926250.1 3881884..3883032(-) (rapC) [Bacillus siamensis strain SCSIO 05746]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTATCGATACATAAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTGGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAATTGGCCT
TCGTATCGGACCACGTGGAGCGGGCAGAGTTTTATTTTAAGGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAGAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCTG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCACCGAC
GAAGCGATTCCTTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCGTCGGAATATCACAGGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAGAATAAAAATTTGTACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.984	100	0.83
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571