Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CWD84_RS20005 Genome accession   NZ_CP025001
Coordinates   3878711..3879664 (-) Length   317 a.a.
NCBI ID   WP_101605585.1    Uniprot ID   A0AAI8HRC2
Organism   Bacillus siamensis strain SCSIO 05746     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3873711..3884664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS19985 (CWD84_19980) - 3874590..3876014 (+) 1425 WP_060963604.1 MDR family MFS transporter -
  CWD84_RS19990 (CWD84_19985) - 3876056..3877000 (-) 945 WP_060963605.1 siderophore ABC transporter substrate-binding protein -
  CWD84_RS19995 (CWD84_19990) - 3877022..3877780 (-) 759 WP_047476235.1 ABC transporter ATP-binding protein -
  CWD84_RS20000 (CWD84_19995) - 3877774..3878721 (-) 948 WP_045926247.1 iron chelate uptake ABC transporter family permease subunit -
  CWD84_RS20005 (CWD84_20000) ceuB 3878711..3879664 (-) 954 WP_101605585.1 ABC transporter permease Machinery gene
  CWD84_RS20010 (CWD84_20005) - 3880080..3881444 (+) 1365 WP_060963607.1 aspartate kinase -
  CWD84_RS20015 (CWD84_20010) - 3881540..3881638 (+) 99 WP_016937260.1 YjcZ family sporulation protein -
  CWD84_RS20020 (CWD84_20015) phrC 3881781..3881900 (-) 120 WP_016937261.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  CWD84_RS20025 (CWD84_20020) rapC 3881884..3883032 (-) 1149 WP_045926250.1 tetratricopeptide repeat protein Regulator
  CWD84_RS20030 (CWD84_20025) - 3883186..3884619 (-) 1434 WP_162492439.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35031.29 Da        Isoelectric Point: 9.7515

>NTDB_id=257117 CWD84_RS20005 WP_101605585.1 3878711..3879664(-) (ceuB) [Bacillus siamensis strain SCSIO 05746]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFDSRLPRLVSIIIAGMSLSIYGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNIVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=257117 CWD84_RS20005 WP_101605585.1 3878711..3879664(-) (ceuB) [Bacillus siamensis strain SCSIO 05746]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGTGTAGAAGACTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTACGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGGATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTAAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAGTCGCCACGTTTATCGCGTATAAATACGATCTGATC
CAAAATCTGTCGTCCTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGGTACGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTTATCGCTTCACTTGTGATTCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATCGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGTCTGCCCCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCTTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

99.685

0.527

Multiple sequence alignment