Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CWD84_RS04980 Genome accession   NZ_CP025001
Coordinates   947877..948521 (+) Length   214 a.a.
NCBI ID   WP_016938117.1    Uniprot ID   A0AAE2TM72
Organism   Bacillus siamensis strain SCSIO 05746     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 942877..953521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS04950 (CWD84_04950) - 943306..943647 (-) 342 WP_060964421.1 hypothetical protein -
  CWD84_RS04960 (CWD84_04960) degQ 944113..944253 (+) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  CWD84_RS04965 (CWD84_04965) - 944405..945280 (+) 876 WP_060965112.1 polyprenyl synthetase family protein -
  CWD84_RS04970 (CWD84_04970) comX 945295..945471 (+) 177 WP_044052947.1 competence pheromone ComX -
  CWD84_RS04975 (CWD84_04975) comP 945490..947796 (+) 2307 WP_060964422.1 sensor histidine kinase Regulator
  CWD84_RS04980 (CWD84_04980) comA 947877..948521 (+) 645 WP_016938117.1 response regulator transcription factor Regulator
  CWD84_RS04985 (CWD84_04985) - 948543..948926 (+) 384 WP_060964423.1 hotdog fold thioesterase -
  CWD84_RS04990 (CWD84_04990) mnhG 948966..949340 (-) 375 WP_060964424.1 monovalent cation/H(+) antiporter subunit G -
  CWD84_RS04995 (CWD84_04995) - 949324..949608 (-) 285 WP_016938120.1 Na(+)/H(+) antiporter subunit F1 -
  CWD84_RS05000 (CWD84_05000) - 949608..950084 (-) 477 WP_060964425.1 Na+/H+ antiporter subunit E -
  CWD84_RS05005 (CWD84_05005) - 950090..951571 (-) 1482 WP_060964426.1 Na+/H+ antiporter subunit D -
  CWD84_RS05010 (CWD84_05010) - 951564..951905 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  CWD84_RS05015 (CWD84_05015) - 951905..952336 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=257068 CWD84_RS04980 WP_016938117.1 947877..948521(+) (comA) [Bacillus siamensis strain SCSIO 05746]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=257068 CWD84_RS04980 WP_016938117.1 947877..948521(+) (comA) [Bacillus siamensis strain SCSIO 05746]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCCGATGCCAGTGAACAGTTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAAGTTGAAGATTATTTTGAAGAATCCATTCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAATGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment