Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CU118_RS05520 Genome accession   NZ_CP024998
Coordinates   1109034..1109720 (-) Length   228 a.a.
NCBI ID   WP_077446658.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1104034..1114720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS05500 (CU118_05500) rpsT 1104948..1105199 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  CU118_RS05505 (CU118_05505) holA 1105244..1106218 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  CU118_RS05510 (CU118_05510) comEC 1106275..1108476 (-) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CU118_RS05515 (CU118_05515) - 1108481..1108942 (-) 462 WP_000439693.1 ComE operon protein 2 -
  CU118_RS05520 (CU118_05520) comEA 1109034..1109720 (-) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  CU118_RS05525 (CU118_05525) - 1109760..1110476 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  CU118_RS05530 (CU118_05530) rsfS 1110479..1110832 (-) 354 WP_001088020.1 ribosome silencing factor -
  CU118_RS05535 (CU118_05535) yqeK 1110833..1111417 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  CU118_RS05540 (CU118_05540) nadD 1111407..1111976 (-) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  CU118_RS05545 (CU118_05545) yhbY 1111979..1112269 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  CU118_RS05550 (CU118_05550) aroE 1112273..1113079 (-) 807 WP_054190052.1 shikimate dehydrogenase -
  CU118_RS05555 (CU118_05555) yqeH 1113093..1114193 (-) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.54 Da        Isoelectric Point: 9.3381

>NTDB_id=257019 CU118_RS05520 WP_077446658.1 1109034..1109720(-) (comEA) [Staphylococcus aureus strain 55-99-44]
MVLLYQFLLRYRDFLIQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=257019 CU118_RS05520 WP_077446658.1 1109034..1109720(-) (comEA) [Staphylococcus aureus strain 55-99-44]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAATTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956

Multiple sequence alignment