Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CU118_RS05510 Genome accession   NZ_CP024998
Coordinates   1106275..1108476 (-) Length   733 a.a.
NCBI ID   WP_054190049.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1101275..1113476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS05495 (CU118_05495) lepA 1102779..1104602 (-) 1824 WP_031767897.1 translation elongation factor 4 -
  CU118_RS05500 (CU118_05500) rpsT 1104948..1105199 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  CU118_RS05505 (CU118_05505) holA 1105244..1106218 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  CU118_RS05510 (CU118_05510) comEC 1106275..1108476 (-) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CU118_RS05515 (CU118_05515) - 1108481..1108942 (-) 462 WP_000439693.1 ComE operon protein 2 -
  CU118_RS05520 (CU118_05520) comEA 1109034..1109720 (-) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  CU118_RS05525 (CU118_05525) - 1109760..1110476 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  CU118_RS05530 (CU118_05530) rsfS 1110479..1110832 (-) 354 WP_001088020.1 ribosome silencing factor -
  CU118_RS05535 (CU118_05535) yqeK 1110833..1111417 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  CU118_RS05540 (CU118_05540) nadD 1111407..1111976 (-) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  CU118_RS05545 (CU118_05545) yhbY 1111979..1112269 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  CU118_RS05550 (CU118_05550) aroE 1112273..1113079 (-) 807 WP_054190052.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 84813.96 Da        Isoelectric Point: 10.0120

>NTDB_id=257017 CU118_RS05510 WP_054190049.1 1106275..1108476(-) (comEC) [Staphylococcus aureus strain 55-99-44]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAMYNYINYIERNPQFNERAQ
VIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFITLKLQSIVEQSCIKSNRSNLIEK
HKQFIMNRIYDSGINFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGIT
IIILALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
RLSKLQSLFIISFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFH
DWILDLFTRIKQSHFSVPKFNDWIFILFIISVYYIFWLLAKRKYILVTFCTIIILTLLITYPTNSHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVIDDIKHPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLL
KKYNLPEIDILKVGHHGSKTSSSKEFIEVIKPKISLISSGKNNMYHLPNIEVVKRLQGIRSRIYNSQQNGQVTIDLDDNL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=257017 CU118_RS05510 WP_054190049.1 1106275..1108476(-) (comEC) [Staphylococcus aureus strain 55-99-44]
TTGCTGTATGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATAGCTTATCGTAAAAATAAAATCGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTCTCCTCATGGT
ATTTACATTATTCACAACAAGCAATGTATAATTATATCAATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGGTAGTGACACATATAAAGGTAGGTTGAGTTTAAAAAATGAAATATATCCTTTCTTTTT
AACAGATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTATAACTCTTAAATTACAAAGTATAGTTGAGCAAAGCTGTATAAAATCGAACCGGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAACTTTCCAGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAAGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTTAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTACCTTTATTTGTCATTAAAGGAATTACA
ATCATTATATTAGCTTTATTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACTCTTGT
ACTGCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCATTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CGATTGTCAAAATTACAATCATTATTCATAATTTCGTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCAAACTT
TCATCAACTTCAATGGGTGGGATTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATATTGTTTCCTCTATCTA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGATTAACGCCGCTAAATTACTTGGTTGACCTAAGTTTTAATTTTCAT
GACTGGATACTGGACCTATTCACAAGAATCAAGCAATCACATTTTTCTGTTCCCAAGTTTAATGATTGGATATTTATATT
ATTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATATATTGGTTACGTTTTGCACTATAATTA
TTCTGACATTATTAATAACGTATCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGACAGTATT
TTATATGAAGGTGGTAAAAACCAAAACGTCTTGATTGATACAGGTGGGAAAGTGATTGATGATATTAAACACCCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATCTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTGGAATATATTATTAGTCATATTAAAATTAAACATATTGTGATTTACAATAAGGGA
TATAGTAGTAAAACATTGATGTTATTATCGAAATTAAGCCATAAGTATAATATTAAACTTATGGATGTAAGACAAGTTAG
TAGTTTTAAACTTGGAGATAGTAGTTTTCTATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATATTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGTTTTATTAATGGGCGATGCTAGTAAAAATAATGAATCTTTACTACTA
AAAAAATATAACTTGCCGGAGATTGATATTTTAAAAGTAGGACATCATGGGAGCAAGACAAGTAGTTCCAAAGAATTTAT
AGAGGTGATTAAGCCTAAAATAAGTTTGATTTCTTCTGGAAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTACAAGGGATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTCAAGTTACAATAGACTTGGATGATAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)

Competence protein (Competence)

(183-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

96.453

100

0.965
  comEC Staphylococcus aureus MW2

96.044

100

0.96

Multiple sequence alignment