Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DL800_RS25720 Genome accession   NZ_CP029692
Coordinates   4470331..4470999 (-) Length   222 a.a.
NCBI ID   WP_001369511.1    Uniprot ID   -
Organism   Escherichia coli strain SD134209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4465331..4475999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL800_RS25690 (DL800_25690) rfaQ 4465509..4466567 (-) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -
  DL800_RS25695 (DL800_25695) waaA 4466980..4468257 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DL800_RS25700 (DL800_25700) coaD 4468265..4468744 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  DL800_RS25705 (DL800_25705) mutM 4468783..4469592 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DL800_RS25710 (DL800_25710) rpmG 4469690..4469857 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  DL800_RS25715 (DL800_25715) rpmB 4469878..4470114 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  DL800_RS25720 (DL800_25720) radC 4470331..4470999 (-) 669 WP_001369511.1 DNA repair protein RadC Machinery gene
  DL800_RS25725 (DL800_25725) coaBC 4471171..4472391 (+) 1221 WP_000050144.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DL800_RS25730 (DL800_25730) dut 4472369..4472827 (+) 459 WP_000976070.1 dUTP diphosphatase -
  DL800_RS25735 (DL800_25735) slmA 4472934..4473530 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  DL800_RS25740 (DL800_25740) pyrE 4473567..4474208 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  DL800_RS25745 (DL800_25745) rph 4474274..4474990 (-) 717 WP_001247089.1 ribonuclease PH -
  DL800_RS25755 (DL800_25755) yicC 4475117..4475980 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25200.31 Da        Isoelectric Point: 8.4958

>NTDB_id=257017 DL800_RS25720 WP_001369511.1 4470331..4470999(-) (radC) [Escherichia coli strain SD134209]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPAMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=257017 DL800_RS25720 WP_001369511.1 4470331..4470999(-) (radC) [Escherichia coli strain SD134209]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGCGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment