Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CU118_RS03390 Genome accession   NZ_CP024998
Coordinates   672642..673514 (+) Length   290 a.a.
NCBI ID   WP_054190205.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 667642..678514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS03370 (CU118_03370) ylqF 668478..669362 (+) 885 WP_054190207.1 ribosome biogenesis GTPase YlqF -
  CU118_RS03375 (CU118_03375) - 669346..670113 (+) 768 WP_054190206.1 ribonuclease HII -
  CU118_RS03380 (CU118_03380) sucC 670222..671388 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  CU118_RS03385 (CU118_03385) sucD 671410..672318 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  CU118_RS03390 (CU118_03390) dprA 672642..673514 (+) 873 WP_054190205.1 DNA-processing protein DprA Machinery gene
  CU118_RS03395 (CU118_03395) topA 673688..675763 (+) 2076 WP_077446642.1 type I DNA topoisomerase -
  CU118_RS03400 (CU118_03400) trmFO 675919..677226 (+) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33168.55 Da        Isoelectric Point: 8.9426

>NTDB_id=257006 CU118_RS03390 WP_054190205.1 672642..673514(+) (dprA) [Staphylococcus aureus strain 55-99-44]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDKIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPRTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=257006 CU118_RS03390 WP_054190205.1 672642..673514(+) (dprA) [Staphylococcus aureus strain 55-99-44]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACATTTCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATAAAATTGAAACAACAATTCAGAAAACCCAATTAAATTACATA
ACCTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCGCACTTTAGCTGTCGTTGGGTCAAGATTGTCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTCGTTTCCGGTCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGGAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATAACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTGCCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAGGATTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.017

100

0.679
  dprA Staphylococcus aureus N315

66.207

100

0.662
  dprA Lactococcus lactis subsp. cremoris KW2

38.929

96.552

0.376
  dprA Vibrio campbellii strain DS40M4

39.483

93.448

0.369

Multiple sequence alignment